View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_22 (Length: 322)

Name: NF11658_low_22
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_22
NF11658_low_22
[»] chr7 (4 HSPs)
chr7 (1-164)||(13932994-13933165)
chr7 (1-164)||(13951719-13951889)
chr7 (253-312)||(13951572-13951631)
chr7 (253-312)||(13932846-13932905)
[»] chr5 (2 HSPs)
chr5 (4-159)||(19667136-19667299)
chr5 (253-295)||(19667396-19667438)
[»] chr3 (2 HSPs)
chr3 (1-116)||(19695478-19695593)
chr3 (1-164)||(32748126-32748296)
[»] chr2 (2 HSPs)
chr2 (8-116)||(24989449-24989557)
chr2 (1-108)||(31716600-31716705)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-116)||(82060-82174)
[»] scaffold0500 (1 HSPs)
scaffold0500 (4-116)||(4126-4240)
[»] chr1 (1 HSPs)
chr1 (1-116)||(21759565-21759682)
[»] chr4 (1 HSPs)
chr4 (1-159)||(14916768-14916931)
[»] chr6 (3 HSPs)
chr6 (1-34)||(8989066-8989099)
chr6 (1-34)||(9004348-9004381)
chr6 (1-34)||(9013513-9013546)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13933165 - 13932994
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  13933165 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctaatcttttcctacaaatgagtgatttt 13933066  T
Q  101 acccttgtctttttac-------ttacctacaatgctttacaa--caataagaaataaattcttactttgacc 164  Q
    ||||||||||||||||       |||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  13933065 acccttgtctttttacacacttgttacctacaa-gctttacaatccaataagaaataaattcttactttgacc 13932994  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13951889 - 13951719
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||    
T  13951889 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcactcttactagatcctcctgatcttttcctacaaacgagtgatttt 13951790  T
Q  101 acccttgtctttttac-------ttacctacaatgctttacaa--caataagaaataaattcttactttgacc 164  Q
    | ||||||||||||||       |||| ||||| |||||||||  ||||||||||||||||||||||||||||    
T  13951789 a-ccttgtctttttacacacttgttacttacaa-gctttacaatgcaataagaaataaattcttactttgacc 13951719  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 13951631 - 13951572
Alignment:
Q  253 ttttgtgaatttgctttgtacgctgaaaatatttctcaaaatttgaggcccattcctttg 312  Q
    |||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||    
T  13951631 ttttgtgaatttgctttgtatgctgaaaatatttctcaaaattcggtgcccattcctttg 13951572  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 13932905 - 13932846
Alignment:
Q  253 ttttgtgaatttgctttgtacgctgaaaatatttctcaaaatttgaggcccattcctttg 312  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||  |||||||||||||    
T  13932905 ttttgtgaattttctttgtatgctgaaaatctttctcaaaatttggtgcccattcctttg 13932846  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 19667136 - 19667299
Alignment:
Q  4 gagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgattttacc 103  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  19667136 gagtaaatctgcctttgcttttacaaccaaaaaatcaaacgagtacaaatcacccttgctagatcctcctgatcttttcctacaaacgggtgattttacc 19667235  T
Q  104 cttgtctttttac-------ttacctacaatgctttacaa--caataagaaataaattcttactt 159  Q
    |||||||||||||       |||||||||| |||||||||  |||||||||||||||||||||||    
T  19667236 cttgtctttttacacacttgttacctacaa-gctttacaatccaataagaaataaattcttactt 19667299  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 19667396 - 19667438
Alignment:
Q  253 ttttgtgaatttgctttgtacgctgaaaatatttctcaaaatt 295  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  19667396 ttttgtgaatttgctttgtatgctgaaaatctttctcaaaatt 19667438  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19695593 - 19695478
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||    
T  19695593 aacgaataaatctacctttgcttttacacctaaaagatcaaacgagtacaaatcacccttgctagatccttcagatcttttcctacaaacgagtgatttt 19695494  T
Q  101 acccttgtctttttac 116  Q
    ||||||||||||||||    
T  19695493 acccttgtctttttac 19695478  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 32748126 - 32748296
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    |||||||||||||| ||| ||||||  | | |||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||    
T  32748126 aacgagtaaatctatcttcgcttttgtacctaaaagatcaaacgagtacaaatcacccttgctagatcctccagattttttcctacaaacgagtgatttt 32748225  T
Q  101 acccttgtctttttac-------ttacctacaatgctttacaa-caataagaaataaattcttactttgacc 164  Q
    ||||||||||||||||       |||||||||| ||||||||| ||||||||||||| ||||||||| ||||    
T  32748226 acccttgtctttttacacacttgttacctacaa-gctttacaatcaataagaaataacttcttacttagacc 32748296  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 24989557 - 24989449
Alignment:
Q  8 aaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgattttacccttg 107  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |  |||||| ||||||||||||||||||||||||||    
T  24989557 aaatctacctttgcttttacacctaaaagatcaaacgagtacaaatcacccttgctagatccttcaaatcttttcctacaaacgagtgattttacccttg 24989458  T
Q  108 tctttttac 116  Q
    |||||||||    
T  24989457 tctttttac 24989449  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31716705 - 31716600
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||   ||||||| ||| |||||| || |||||| | | | ||| ||||||||| |    
T  31716705 aacgagtaattctacctttgcttttacaaccaaaa-at-aaacgagtgtcaatcacctttgctagatcttcttgatctcttcttgcaaccgagtgattct 31716608  T
Q  101 acccttgt 108  Q
    ||||||||    
T  31716607 acccttgt 31716600  T

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Target: scaffold0028 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 82174 - 82060
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttt 100  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||  ||||||||||| | | ||| |||||||||||    
T  82174 aacgagtaaatctacctttgcttttacacctaaaatatcaaacgagtacaaatcacccttgctagattttcctgatcttt-cttgcaaccgagtgatttt 82076  T
Q  101 acccttgtctttttac 116  Q
    ||||||||||||||||    
T  82075 acccttgtctttttac 82060  T

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Target: scaffold0500 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 4240 - 4126
Alignment:
Q  4 gagtaaatctacctttgctttta--caaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatttta 101  Q
    ||||||||||||||||||||||   || | |||||||||||||||||||||||||||||| |||||||| | |||||||  |||||||  ||||||||||    
T  4240 gagtaaatctacctttgctttttttcacctaaaagatcaaacgagtacaaatcacccttgctagatccttcagatctttttctacaaataagtgatttta 4141  T
Q  102 cccttgtctttttac 116  Q
    || ||||||||||||    
T  4140 cctttgtctttttac 4126  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21759682 - 21759565
Alignment:
Q  1 aacgagtaaatctacctttgctttta--caaccaaaagatcaaacgagtacaaatcacccttgttagatcctcctgatctttccctacaaacgagtgatt 98  Q
    |||||||||||||||||||| ||||   |  | |||||||||||||||||||||||||||||| ||||||||   ||||||| |||||||| |||||||     
T  21759682 aacgagtaaatctacctttgttttttttctcctaaaagatcaaacgagtacaaatcacccttgctagatcctttagatcttttcctacaaatgagtgatc 21759583  T
Q  99 ttacccttgtctttttac 116  Q
    ||||| ||||||||||||    
T  21759582 ttacctttgtctttttac 21759565  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14916931 - 14916768
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaaagatcaaacgagt-acaaatcacccttgttagatcctcctgatctttccctacaaacgagtgattt 99  Q
    ||||||||||||||||||||||||||||||| |||||   ||||||| |||| |  |||||| |||||| |||||||||||  || ||| ||||| ||||    
T  14916931 aacgagtaaatctacctttgcttttacaacc-aaaga--gaacgagtaacaattaccccttgctagatcttcctgatcttt-tctgcaaccgagtaattt 14916836  T
Q  100 tacccttgtctttttac-------ttacctacaatgctttacaa--caataagaaataaattcttactt 159  Q
    |||| ||||||||||||       |||||||||| |||||||||  |||||||||||||| ||||||||    
T  14916835 tacctttgtctttttacacacttgttacctacaa-gctttacaatccaataagaaataaaatcttactt 14916768  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8989099 - 8989066
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8989099 aacgagtaaatctacctttgcttttacaaccaaa 8989066  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9004381 - 9004348
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9004381 aacgagtaaatctacctttgcttttacaaccaaa 9004348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9013546 - 9013513
Alignment:
Q  1 aacgagtaaatctacctttgcttttacaaccaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9013546 aacgagtaaatctacctttgcttttacaaccaaa 9013513  T

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