View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11658_low_23 (Length: 319)
Name: NF11658_low_23
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_23 |
 | |
|
| [»] chr8 (4 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 67 - 306
Target Start/End: Complemental strand, 47023191 - 47022949
Alignment:
| Q |
67 |
aaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg--tttttagcatgaatgtgaagatttccttcccaagaattgaagattctagccccc |
164 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||| ||||||||||||| ||||||| |
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|
| T |
47023191 |
aaaattaggagggaagaagcgcgggtaaaatagaggtatgggtgggtttttagcatgaatgtgaagatttcatttccaggaattgaagattccagccccc |
47023092 |
T |
|
| Q |
165 |
acccccgagaataaaaatagagagtcaacggattaataagattctgggaatcattttatt-ctggatatattgtttttgttcccttctaccaaacataag |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||| | |
|
|
| T |
47023091 |
acccccgagaataaaaatagagagtcaacggattaataagattctgggaatcattttattcctgggtatattatttttgttcccttctaccaaatatagg |
47022992 |
T |
|
| Q |
264 |
aatatcgtatttaatacccttattctccgtaatttatttttta |
306 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
47022991 |
aatattgtatttaatacccttattctcagtaatatatttttta |
47022949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 21868035 - 21868331
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gtgtgtttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||| ||||||| |
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|
| T |
21868035 |
tatatatgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgagttttcgccatgaat |
21868134 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctagccc-ccacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| | ||||||||| || |||||||||| |
|
|
| T |
21868135 |
gtggagatttcattcccaggaattgaagattccagcccaccacccccgggaataaaaatagagagtcaacgggtaaataagattcctaggaatcatttat |
21868234 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| || | |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
21868235 |
tcctaggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
21868331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 4057960 - 4057871
Alignment:
| Q |
230 |
tatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
4057960 |
tatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
4057871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 15362710 - 15362415
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gtgtgtttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||| ||||||| |
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|
| T |
15362710 |
tatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcgccatgaat |
15362611 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctagcccccacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcattttat |
223 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
15362610 |
gtggagatttcattcccaggaattgaagattccagccccccacccctggaataaaaatagagagtcaacggataaataagattcctgggaatcatttatt |
15362511 |
T |
|
| Q |
224 |
tctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
15362510 |
cctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
15362415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 18166607 - 18166294
Alignment:
| Q |
12 |
gagcagagaggagtttatatat--gtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gt |
107 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||| || |
|
|
| T |
18166607 |
gagcaaagaggggtttatatatacgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaatagcggtatgggt |
18166508 |
T |
|
| Q |
108 |
gtgtttttagcatgaatgtgaagatttccttcccaagaattgaagattctagccc-ccacccccgagaataaaaatagagagtcaacggattaataagat |
206 |
Q |
| |
|
| ||||| |||||||||| ||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
18166507 |
gggttttcgccatgaatgtggagatttcattcccaggaattgaagattccagcccaccacccccgagaataaaaatagagagtcaacgggtaaataagat |
18166408 |
T |
|
| Q |
207 |
t-ctgggaatcattttattc-tggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttt |
304 |
Q |
| |
|
| ||| |||||| ||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | | ||| ||||||| |
|
|
| T |
18166407 |
tcctgtgaatca-tttattcttgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcacaggaatatattttt |
18166309 |
T |
|
| Q |
305 |
tatctccaaaacaaa |
319 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
18166308 |
tatctcccaaacaaa |
18166294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 20266448 - 20266152
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg--tttttagcatgaat |
124 |
Q |
| |
|
||||||| || |||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||| |||||| ||| |||| | ||||||| |
|
|
| T |
20266448 |
tatatatatgagtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcaccatgaat |
20266349 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtcaacggattaataagattc-tgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| ||| || ||||||||||||| ||||||| |||| || ||||||||||||||||||||||| | |||||||||| ||||||||| || |
|
|
| T |
20266348 |
gtggagatttcattctcaggaattgaagattccagccccccaccctcgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcaattat |
20266249 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
20266248 |
tcctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaa |
20266152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 21053077 - 21052781
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg--tttttagcatgaat |
124 |
Q |
| |
|
||||||| || |||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||| |||||| ||| |||| | ||||||| |
|
|
| T |
21053077 |
tatatatatgagtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcaccatgaat |
21052978 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtcaacggattaataagattc-tgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| ||| || ||||||||||||| ||||||| |||| || ||||||||||||||||||||||| | |||||||||| ||||||||| || |
|
|
| T |
21052977 |
gtggagatttcattctcaggaattgaagattccagccccccaccctcgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcaattat |
21052878 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
21052877 |
tcctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaa |
21052781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 27 - 319
Target Start/End: Original strand, 27366232 - 27366528
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gtgtgtttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||| | ||||||| |
|
|
| T |
27366232 |
tatatatgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcaccatgaat |
27366331 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctag-cccccacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||| | ||||||||| ||| |||||||| |
|
|
| T |
27366332 |
gtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagattcctgaaaatcatttat |
27366431 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
27366432 |
tcctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
27366528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 28 - 319
Target Start/End: Original strand, 30200578 - 30200873
Alignment:
| Q |
28 |
atatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg--tttttagcatgaatg |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||| |||||||||| || ||| ||| |||| |||||||| |
|
|
| T |
30200578 |
atatatgtgggtttctattaatttagaaaacgtgtgggaaaaattaggagggaagaagcgcaggtaaaataggggcatgggtgggttttcgccatgaatg |
30200677 |
T |
|
| Q |
126 |
tgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtcaacggattaataagattc-tgggaatcattttat |
223 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||||||||| | |
|
|
| T |
30200678 |
tggagatttcattcccaggaattgaagattccatccccccacccccgagaataaaaatagagagtcaacgggtaaataagattcctgagaatcatttatt |
30200777 |
T |
|
| Q |
224 |
tctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
30200778 |
cctgagtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
30200873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 45113228 - 45113431
Alignment:
| Q |
118 |
catgaatgtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtcaacggattaataagattc-tgggaat |
215 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||| | |||||||||| ||| ||| |
|
|
| T |
45113228 |
catgaatgtggagatttcattcccaggaattgaagattccagccccccacctccgggaataaaaatagagagtcaacgggtaaataagattcctggaaat |
45113327 |
T |
|
| Q |
216 |
cattttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaa |
315 |
Q |
| |
|
||||| | |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | ||| |||||||||||||| ||| |
|
|
| T |
45113328 |
catttattcctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattctcaggaatatattttttatctcccaaa |
45113427 |
T |
|
| Q |
316 |
caaa |
319 |
Q |
| |
|
|||| |
|
|
| T |
45113428 |
caaa |
45113431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 48944819 - 48945117
Alignment:
| Q |
31 |
tatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg---------tttttagcatg |
121 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||| | |||| ||| | ||||||||||| | |||| ||| |||| | ||| |
|
|
| T |
48944819 |
tatgtgggtttctattaatttggaaaatgagtgggaaaaattaggagggaaaaagtg-gggtaaaatagggatatgggtgggttttcaattttcaccata |
48944917 |
T |
|
| Q |
122 |
aatgtgaagatttccttcccaagaattgaagattctagcccccacccccgag-aataaaaatagagagtcaacggattaataagattc-tgggaatcatt |
219 |
Q |
| |
|
|||||| ||||||| || ||| ||||||||||||| ||||||| ||| || ||||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
48944918 |
aatgtggagatttcatttccaggaattgaagattccagccccccaacccaaggaataaaaatagagagtcaatgggttaataagattcctgggaatcatt |
48945017 |
T |
|
| Q |
220 |
ttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| | |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
48945018 |
tattcctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaa |
48945117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 1838749 - 1838859
Alignment:
| Q |
209 |
tgggaatcattttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatc |
308 |
Q |
| |
|
|||||||||||| | |||| |||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||| | ||| ||||||||||| |
|
|
| T |
1838749 |
tgggaatcatttattcctgggtatattatttttgttcccttctaccaaatataggaatatcgtatttaatgcccttattcctagaaatatattttttatc |
1838848 |
T |
|
| Q |
309 |
tccaaaacaaa |
319 |
Q |
| |
|
||| ||||||| |
|
|
| T |
1838849 |
tcccaaacaaa |
1838859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 12336029 - 12335733
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gtgtgtttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
12336029 |
tatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgcgggtaaaataggggtatgggtgggttttcgccatgaat |
12335930 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctag-cccccacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
12335929 |
gtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcatttat |
12335830 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| | |||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
12335829 |
tcctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgctcttatttccaggaatatattttttatctcccaaacaaa |
12335733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 95 - 319
Target Start/End: Original strand, 604160 - 604387
Alignment:
| Q |
95 |
aatagaggtatgtgtg--tttttagcatgaatgtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtca |
191 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||| ||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||||||||||||| |
|
|
| T |
604160 |
aatagaggtatgggtgggttttcaccatgaatgtggagatttcattcccaggaattgaagattccaaccccccacccccgaaaataaaaatagagagtca |
604259 |
T |
|
| Q |
192 |
acggattaataagattc-tgggaatcattttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctc |
290 |
Q |
| |
|
|| | | |||||||||| || |||||||| | ||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
604260 |
acaggtaaataagattcctgaaaatcatttattcctgagtatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattctc |
604359 |
T |
|
| Q |
291 |
cgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
||| |||||||| ||||| ||||||| |
|
|
| T |
604360 |
ataaatatatttttt-tctcccaaacaaa |
604387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 34025069 - 34024756
Alignment:
| Q |
12 |
gagcagagaggagtttatatat--gtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgt |
109 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| ||||||||| |||||| || |
|
|
| T |
34025069 |
gagcaaagaggggtttatatatacgtgggtttctattaatttagaaaacgcatgggaaaaattaggagggaagaagcgcgagtaaaataggggtatgggt |
34024970 |
T |
|
| Q |
110 |
g--tttttagcatgaatgtgaagatttccttcccaagaattgaagattctagccc-ccacccccgagaataaaaatagagagtcaacggattaataagat |
206 |
Q |
| |
|
| |||| |||||||||| ||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34024969 |
gggttttcgccatgaatgtggagatttcattcccaggaattgaagattccagcccaccacccccgagaataaaaatagagagtcaacgggtaaataagat |
34024870 |
T |
|
| Q |
207 |
tc-tgggaatcattttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttatttttt |
305 |
Q |
| |
|
|| || ||||||||| | ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| | | ||| |||||||| |
|
|
| T |
34024869 |
tcctgagaatcatttattcctgagtatattatttttgttcccttctaccaaacataggaatatcgtatttaatacctttattcccaggaatatatttttt |
34024770 |
T |
|
| Q |
306 |
atctccaaaacaaa |
319 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
34024769 |
atctcccaaacaaa |
34024756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 319
Target Start/End: Complemental strand, 34917584 - 34917349
Alignment:
| Q |
88 |
cgggtaaaatagaggtatgtgtg--tttttagcatgaatgtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatag |
184 |
Q |
| |
|
|||||||||||| |||||| ||| |||| | |||||||||| ||||||| |||||| ||||||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
34917584 |
cgggtaaaataggggtatgggtggattttcaccatgaatgtggagatttcattcccaggaattgaagattccagccccccacccccgggaataaaaatag |
34917485 |
T |
|
| Q |
185 |
agagtcaacggattaataagattc-tgggaatcattttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaataccct |
283 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||| | |||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
34917484 |
agagtcaacgggtaaataagattcctgggaatcatttattcctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgccct |
34917385 |
T |
|
| Q |
284 |
tattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
34917384 |
tattcccaggaatatattttttatctcccaaacaaa |
34917349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 7955397 - 7955101
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtat--gtgtgtttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
7955397 |
tatatatgtgggtttctattaatttagaaaacgcgtgggaaaaattaggagggaagaagcgtgggtaaaataggggtatgggtgggttttcgtcatgaat |
7955298 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctag-cccccacccccgagaataaaaatagagagtcaacggattaataagatt-ctgggaatcatttta |
222 |
Q |
| |
|
||| ||||||| ||| || ||||||||||||| || |||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
7955297 |
gtggagatttcattctcaggaattgaagattccagccccccacccccgggaataaaaatagagagtcaacgggtaaataagattcctgggaatcatttat |
7955198 |
T |
|
| Q |
223 |
ttctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||| | | | ||| |||||||||||||| ||||||| |
|
|
| T |
7955197 |
tcctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttatacccaggaatatattttttatctcccaaacaaa |
7955101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 1592794 - 1592517
Alignment:
| Q |
27 |
tatatatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg--tttttagcatgaat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||| ||||||||| |||||| ||| |||| ||||||| |
|
|
| T |
1592794 |
tatatatgtgggtttctattaatttagaaaacgcgtgggaaaaatgaggagggaagaagcgcgagtaaaataggggtatgggtggattttcgccatgaat |
1592695 |
T |
|
| Q |
125 |
gtgaagatttccttcccaagaattgaagattctagccc-ccacccccgagaataaaaatagagagtcaacggattaataagattctgggaatcattttat |
223 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| ||||| ||||||||| || |||||||||||||||||||| | ||| |||||| |
|
|
| T |
1592694 |
gtggagatttcattccc-ggaattgaagattccagcccgccacccccg-gattaaaaatagagagtcaacgggtaaattagattc--------------- |
1592612 |
T |
|
| Q |
224 |
tctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
1592611 |
-atgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccagaaatatattttttatctcccaaacaaa |
1592517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 319
Target Start/End: Original strand, 7771120 - 7771285
Alignment:
| Q |
145 |
aattgaagattctagcccccacccccgagaataaaaatagagagtcaacggattaataagattctgggaatcattttattctggatatattgtttttgtt |
244 |
Q |
| |
|
|||||||||||| | |||||||| ||| ||||||||||||||||| || || | ||||| ||| |||| ||||| |||||| |||||||| |
|
|
| T |
7771120 |
aattgaagattccaacccccacctccgggaataaaaatagagagttaatgggtaaataaaatt---------atttatttctgagtatattatttttgtt |
7771210 |
T |
|
| Q |
245 |
cccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
7771211 |
tccttctaccaaacatagaaatatcgtatttaatgtccttattcctaagaatatattttttatctcccaaacaaa |
7771285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 31 - 319
Target Start/End: Complemental strand, 34147719 - 34147423
Alignment:
| Q |
31 |
tatgtgggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatgtgtg---------tttttagcatg |
121 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||| | |||| ||| | ||||||||||| | |||| ||| |||| | ||| |
|
|
| T |
34147719 |
tatgtgggtttctattaatttggaaaatgagtgggaaaaattaggagggaaaaagtg-gggtaaaatagggatatgggtgggttttcaattttcaccata |
34147621 |
T |
|
| Q |
122 |
aatgtgaagatttccttcccaagaattgaagattctagccccc-acccccgagaataaaaatagagagtcaacggattaataagattc-tgggaatcatt |
219 |
Q |
| |
|
|||||| ||||||| || ||| ||||||||||||| ||||||| | |||| |||||||||||||| |||| || |||||||||||| ||||||||||| |
|
|
| T |
34147620 |
aatgtggagatttcatttccaggaattgaagattccagccccccaaccccaggaataaaaatagag--tcaatgggttaataagattcctgggaatcatt |
34147523 |
T |
|
| Q |
220 |
ttattctggatatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
| | || | |||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
34147522 |
tattcctaggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgccattattcccaggaatatattttttatctcccaaacaaa |
34147423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 28983929 - 28984018
Alignment:
| Q |
230 |
tatattgtttttgttcccttctaccaaacataagaatatcgtatttaatacccttattctccgtaatttattttttatctccaaaacaaa |
319 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
28983929 |
tatattttttttgttcgcttctaccaaacataggaatatcgtatttaatgcccttattctcataaatatattttttatctcccaaacaaa |
28984018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 28983852 - 28983922
Alignment:
| Q |
36 |
gggtttctattaatttggaaaacgcgtgggaaaaattagcatggaagaagcgcgggtaaaatagaggtatg |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| |
|
|
| T |
28983852 |
gggtttatattaatttggaaaacgcgtgggaaaaattaggagggaagaagcacgggtaaaataggggtatg |
28983922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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