View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_25 (Length: 298)
Name: NF11658_low_25
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35280086 - 35280370
Alignment:
| Q |
1 |
actggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggag |
100 |
Q |
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| T |
35280086 |
actggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggag |
35280185 |
T |
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| Q |
101 |
agacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgta |
200 |
Q |
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| T |
35280186 |
agacagaatcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgta |
35280285 |
T |
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| Q |
201 |
tatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
285 |
Q |
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| T |
35280286 |
tatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
35280370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 35289435 - 35289715
Alignment:
| Q |
5 |
gagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagac |
104 |
Q |
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| T |
35289435 |
gagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagac |
35289534 |
T |
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| Q |
105 |
agaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatg |
204 |
Q |
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| T |
35289535 |
agaatcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatata |
35289634 |
T |
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| Q |
205 |
cgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacct |
285 |
Q |
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| T |
35289635 |
cgagttctgaaaaattgacattctgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacct |
35289715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 35307246 - 35307497
Alignment:
| Q |
18 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
117 |
Q |
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| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
118 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
217 |
Q |
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| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
|
| Q |
218 |
attgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
269 |
Q |
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| T |
35307446 |
attggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35307497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 35275323 - 35275601
Alignment:
| Q |
5 |
gagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagac |
104 |
Q |
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|||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| ||||| |||||||| || ||||| ||| |
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| T |
35275323 |
gagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgac |
35275422 |
T |
|
| Q |
105 |
agaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatg |
204 |
Q |
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|||||||| ||||| ||||| |||||||||||||| ||| || ||| |||||||||||| || |||||| |||| ||||| | |||||||| |||| |
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| T |
35275423 |
agaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatg |
35275522 |
T |
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| Q |
205 |
cgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagac |
283 |
Q |
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| T |
35275523 |
cgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagac |
35275601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 35322247 - 35322498
Alignment:
| Q |
18 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
117 |
Q |
| |
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||||||||| |||||||||||||| | ||| ||||| | |||||||| | |||||||||| ||||||||| | ||||| || || ||||||||| |
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| T |
35322247 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggt |
35322346 |
T |
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| Q |
118 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
217 |
Q |
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| T |
35322347 |
gctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35322446 |
T |
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| Q |
218 |
attgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
269 |
Q |
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| T |
35322447 |
attggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35322498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 35311589 - 35311837
Alignment:
| Q |
18 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
117 |
Q |
| |
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||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
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| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
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| Q |
118 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
214 |
Q |
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|| ||||| |||||| ||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
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| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
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| Q |
215 |
aaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgt |
263 |
Q |
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| T |
35311789 |
acaatcgacactctccttggcctatggtgtgtgcaccagaaagtactgt |
35311837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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