View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_27 (Length: 266)

Name: NF11658_low_27
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_27
NF11658_low_27
[»] chr4 (24 HSPs)
chr4 (1-259)||(7765165-7765423)
chr4 (1-246)||(7786000-7786245)
chr4 (1-217)||(7770990-7771206)
chr4 (1-217)||(7789675-7789891)
chr4 (1-217)||(7237996-7238212)
chr4 (1-179)||(7877344-7877522)
chr4 (1-150)||(7774105-7774254)
chr4 (10-192)||(7822580-7822762)
chr4 (3-178)||(7904657-7904832)
chr4 (96-217)||(45372428-45372549)
chr4 (10-192)||(7800248-7800430)
chr4 (10-192)||(7813091-7813273)
chr4 (96-186)||(48156798-48156888)
chr4 (88-192)||(48891020-48891124)
chr4 (96-195)||(49044600-49044699)
chr4 (88-189)||(7907939-7908040)
chr4 (88-187)||(48862857-48862959)
chr4 (89-187)||(45366582-45366683)
chr4 (96-195)||(33134194-33134296)
chr4 (96-201)||(48170957-48171065)
chr4 (96-201)||(48870144-48870249)
chr4 (96-201)||(48885830-48885935)
chr4 (96-161)||(49041509-49041574)
chr4 (122-179)||(49048996-49049053)
[»] chr5 (4 HSPs)
chr5 (1-219)||(1812009-1812221)
chr5 (1-68)||(1811854-1811921)
chr5 (88-185)||(29712832-29712929)
chr5 (88-161)||(29695794-29695867)
[»] chr8 (5 HSPs)
chr8 (98-205)||(12194899-12195006)
chr8 (98-205)||(12439327-12439434)
chr8 (102-205)||(12199905-12200008)
chr8 (102-205)||(12444333-12444436)
chr8 (54-188)||(15348477-15348611)
[»] chr3 (4 HSPs)
chr3 (1-222)||(11024813-11025034)
chr3 (15-192)||(11015815-11015992)
chr3 (96-189)||(47452278-47452371)
chr3 (96-217)||(11006333-11006454)
[»] chr1 (1 HSPs)
chr1 (88-150)||(24309830-24309892)
[»] scaffold0508 (1 HSPs)
scaffold0508 (88-150)||(11915-11977)
[»] chr6 (2 HSPs)
chr6 (96-217)||(21015362-21015483)
chr6 (119-179)||(14193139-14193199)
[»] chr2 (1 HSPs)
chr2 (89-148)||(21426041-21426100)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7765423 - 7765165
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7765423 cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgttttgcatggttaagttggaaatg 7765324  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765323 tgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 7765224  T
Q  201 atgatcagttcttgaggaaaatccatgctttgagcagcgttattcttcactctctgctt 259  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7765223 atgatcagttcttgaggaagatccatgctttgagcagcgttattcttcactctctgctt 7765165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 7786245 - 7786000
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  7786245 cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatg 7786146  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | ||  ||||| |||||||| ||||||||||||  ||||    
T  7786145 tgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctcaacagagtttga 7786046  T
Q  201 atgatcagttcttgaggaaaatccatgctttgagcagcgttattct 246  Q
    | ||||||||||||||||| |||||||||||||||| |||||||||    
T  7786045 aggatcagttcttgaggaagatccatgctttgagcaacgttattct 7786000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7771206 - 7770990
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||| ||| ||| |||||||||||||||| |||||| ||||||  |  |||||| |||||    
T  7771206 cgttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatg 7771107  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
    ||||||| |||| |||||||||||||||| |||||||||  ||||||||| ||| ||||||  ||  |||||||||||||| ||||||| ||||| |||     
T  7771106 tgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttgg 7771007  T
Q  201 atgatcagttcttgagg 217  Q
    || || ||||| |||||    
T  7771006 attattagttcatgagg 7770990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7789891 - 7789675
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    ||||||||||||| ||||||||||| |||| ||||||| ||||| ||| ||| || ||||||||||||| |||||| |||||   |  |||||| |||||    
T  7789891 cgttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatg 7789792  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
    ||||||| |||| |||||||| ||||||| |||||||||  ||||||||| ||| ||||||  ||  |||||||||||||| ||||||| ||||| |||     
T  7789791 tgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttgg 7789692  T
Q  201 atgatcagttcttgagg 217  Q
    || |||||||| |||||    
T  7789691 attatcagttcatgagg 7789675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7237996 - 7238212
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    ||||||||||||| |||  ||| || |||||||||||| |||||| || ||| ||||||||||| |||||||| |||||||||  | || ||||||||||    
T  7237996 cgttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatg 7238095  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
    |||||||||||| ||||| |||||||||| |||||||||  |||||||||  || ||||||   |  ||||||||||| || ||||||| ||||| |||     
T  7238096 tgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttgg 7238195  T
Q  201 atgatcagttcttgagg 217  Q
    ||||| ||||| |||||    
T  7238196 atgattagttcatgagg 7238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 7877522 - 7877344
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||||| ||| ||||| | || |||| ||||||||||||    | | ||||| |||||    
T  7877522 cgttaagaaatgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatg 7877423  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcacc 179  Q
    |||||||||||| |  ||||||||||||| ||||||||||| |||||||||||| ||||||  ||  ||||||||||||    
T  7877422 tgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7774105 - 7774254
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||||| ||| ||||| | || |||| ||||||||||||    | | ||||| |||||    
T  7774105 cgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatg 7774204  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa 150  Q
    |||||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  7774205 tgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaa 7774254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 7822762 - 7822580
Alignment:
Q  10 atgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgca-tggttaagttggaaatgtgaatttg 108  Q
    ||||||||| |||||| |||||||||||| |||||| || ||| | || || || ||||||||| || |||||| |||| || ||| || ||||||||||    
T  7822762 atgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagtatgtgttgcagtggtgaa-ttgaaattgtgaatttg 7822664  T
Q  109 caaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
    |||| || ||||||||||||| |||||||||| | |||||||  |||||||||  ||  ||| |||||||||| ||||||||||    
T  7822663 caaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaaca 7822580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 7904832 - 7904657
Alignment:
Q  3 ttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatgtg 102  Q
    ||||||||||| ||||||| ||  ||| |||||||| ||||||||  ||| ||||| | || |||| ||||||  | |||   | | ||||| |||||||    
T  7904832 ttaagaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtg 7904733  T
Q  103 aatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcac 178  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||  || ||||||  ||  |||||||||||    
T  7904732 aatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 45372428 - 45372549
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||  || ||||||  ||  |||||||||||||| ||||| |  ||||    
T  45372428 aaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaa 45372527  T
Q  196 attgaatgatcagttcttgagg 217  Q
     |||||| |||| ||| |||||    
T  45372528 tttgaatcatcaattcatgagg 45372549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 7800430 - 7800248
Alignment:
Q  10 atgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgca-tggttaagttggaaatgtgaatttg 108  Q
    ||||||||| |||||| |||||||||||| |||||| || ||| | || || || ||||||||| || |||||| |||| || ||| || ||||||||||    
T  7800430 atgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagtatgtgttgcagtggtgaa-ttgaaattgtgaatttg 7800332  T
Q  109 caaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
    ||||  | |||||||||| || |||||||||| | |||||||  |||||||||  ||  ||| |||||||||| ||||||||||    
T  7800331 caaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaaca 7800248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 7813273 - 7813091
Alignment:
Q  10 atgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgca-tggttaagttggaaatgtgaatttg 108  Q
    ||||||||| |||||| |||||||||||| |||||| || ||| | || || ||  |||||||| || |||||| |||| || ||| || ||||| ||||    
T  7813273 atgcatcaacatctatcgatcgaatttcatgagataaagatgataagcctataatcctacgagtatgtgttgcagtggtgaa-ttgaaattgtgactttg 7813175  T
Q  109 caaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
    |||| || || |||||||||| |||||||||| | |||||||  |||||||||  ||  ||| |||||||||| ||||||||||    
T  7813174 caaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaaca 7813091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 48156798 - 48156888
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacc 186  Q
    ||||| ||||||||||| |||| ||| ||||||| |||||||||  ||||||||| ||||||||||  ||  |||||||||||||||||||    
T  48156798 aaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 48891124 - 48891020
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct 187  Q
    ||||||| ||||| ||||||||||| |||||||| |||| || |||||||||  ||||||||| ||| ||||||  ||  |||||||| |||| ||||||    
T  48891124 taagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacct 48891025  T
Q  188 caaca 192  Q
    |||||    
T  48891024 caaca 48891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 49044600 - 49044699
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    ||||||||||||||||| || |  | |||||||| ||||||||||||||||||||  |||||||||  ||| |||||| |||| || ||||||| |||||    
T  49044600 aaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaa 49044699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 7908040 - 7907939
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacct 187  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||| |||||| ||   ||||||||  |   |||||||||||||| |||||    
T  7908040 taagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacct 7907941  T
Q  188 ca 189  Q
    ||    
T  7907940 ca 7907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 48862959 - 48862857
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatc---agagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaa 184  Q
    ||||||| ||||||||||||||||| ||||||||   |||||||| |||||||||  |||| |||| ||| ||||||   |  |||||||||||||||||    
T  48862959 taagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaa 48862860  T
Q  185 cct 187  Q
    |||    
T  48862859 cct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 45366582 - 45366683
Alignment:
Q  89 aagttggaaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 185  Q
    |||||| ||||||||||||||||| || | ||||   ||||||| |||||||||  ||||||||| ||||||||||  ||  ||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  186 ct 187  Q
    ||    
T  45366682 ct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 33134194 - 33134296
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
    ||||||||||||||||| |||||||||   ||||||| |||||| ||   |||||||| ||| ||||||   |  ||||||||||||||||| |||||||    
T  33134194 aaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaaca 33134293  T
Q  193 gaa 195  Q
    |||    
T  33134294 gaa 33134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 48170957 - 48171065
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatca---gagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
    ||||| ||||||||||| |||||||||   ||||||| || ||||||  |||||||||  || ||||||  ||  ||||||||||||| |||||||| ||    
T  48170957 aaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagca 48171056  T
Q  193 gaaattgaa 201  Q
    ||| |||||    
T  48171057 gaatttgaa 48171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 48870249 - 48870144
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    |||||||||||||||||  | ||||| ||||||| | |||||||  ||||||||| ||| ||||||   |  ||||| |||||||||| ||||| |||||    
T  48870249 aaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 48870150  T
Q  196 attgaa 201  Q
     |||||    
T  48870149 tttgaa 48870144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 48885935 - 48885830
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    |||||||||||||||||  | ||||| ||||||| | |||||||  ||||||||| ||| ||||||   |  ||||| |||||||||| ||||| |||||    
T  48885935 aaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 48885836  T
Q  196 attgaa 201  Q
     |||||    
T  48885835 tttgaa 48885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 49041509 - 49041574
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaa 161  Q
    ||||| ||||||||||| || ||||||||||||| |||||||||  |||| |||| ||| ||||||    
T  49041509 aaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaa 49041574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 49048996 - 49049053
Alignment:
Q  122 agagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcacc 179  Q
    |||||||| ||||||||||||||||||||  |||||||||  ||| |||||| |||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1812221 - 1812009
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    |||||||||||||||||||||| || | |||||||| |||||||  |||||||||||||||||||||| ||||||| ||||      ||||||| |||||    
T  1812221 cgttaagaaatgcatcaaaatcgataggtcgaatttgaggagattaagctgaaatgcataaaaatctaagagtgtgtgttg------taagttgaaaatg 1812128  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
      |||||||||| || ||||  ||||||| ||||||||||||||||||||  || ||| ||  || |||| ||||||| ||||||||||||| || ||||    
T  1812127 ataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaacaaaatttga 1812028  T
Q  201 atgatcagttcttgaggaa 219  Q
    | ||||||||| |||||||    
T  1812027 acgatcagttcctgaggaa 1812009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1811854 - 1811921
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatcta 68  Q
    |||||||||||||||||||||| || ||||||||||||||||||| || ||||||| |||||||||||    
T  1811854 cgttaagaaatgcatcaaaatcgatagatcgaatttcaggagataaagttgaaatgtataaaaatcta 1811921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 29712832 - 29712929
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 185  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  29712832 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 29695867 - 29695794
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaa 161  Q
    ||||||| ||||||||||||||||| ||||| | ||| |||| ||| |||||||||||||||| ||| ||||||    
T  29695867 taagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaa 29695794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 12195006 - 12194899
Alignment:
Q  98 atgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaat 197  Q
    ||||||||||||||| || ||||||||||||| ||| |||||| ||||||||||||| ||||||  ||| |||||||||||||| ||||||| ||| | |    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12194907  T
Q  198 tgaatgat 205  Q
    ||||||||    
T  12194906 tgaatgat 12194899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 12439434 - 12439327
Alignment:
Q  98 atgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaat 197  Q
    ||||||||||||||| || ||||||||||||| ||| |||||| ||||||||||||| ||||||  ||| |||||||||||||| ||||||| ||| | |    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12439335  T
Q  198 tgaatgat 205  Q
    ||||||||    
T  12439334 tgaatgat 12439327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 12200008 - 12199905
Alignment:
Q  102 gaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaa 201  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||  || ||||||  ||| |||||||||||||| ||||||| ||| | |||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  202 tgat 205  Q
    ||||    
T  12199908 tgat 12199905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 12444436 - 12444333
Alignment:
Q  102 gaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaa 201  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||  || ||||||  ||| |||||||||||||| ||||||| ||| | |||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  202 tgat 205  Q
    ||||    
T  12444336 tgat 12444333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 15348611 - 15348477
Alignment:
Q  54 atgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgc 153  Q
    ||||| |||| |||||||||||| |||||   | ||| ||| |||||||||||||| || | |||||||||||||| |||||||||  ||||||||| ||    
T  15348611 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgc 15348512  T
Q  154 acttgaaaactaagagagacttcaccggtaacctc 188  Q
    | ||||||  ||  |||||||||||||||||||||    
T  15348511 atttgaaacgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11024813 - 11025034
Alignment:
Q  1 cgttaagaaatgcatcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatg 100  Q
    |||||||  |||| |||||||||||||||||| ||||  ||| ||||| ||| ||| | | || ||||  |||||| |||||| ||  |||||  |||||    
T  11024813 cgttaagcgatgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatg 11024912  T
Q  101 tgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattga 200  Q
     || |||||||| | | |||||||||||| ||  |||||| ||||||||| ||| ||||||  || ||||||||||||||||||||||||||  | |||     
T  11024913 cgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgt 11025012  T
Q  201 atgatcagttcttgaggaaaat 222  Q
    ||||||| ||| ||||| ||||    
T  11025013 atgatcaattcatgaggcaaat 11025034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 11015815 - 11015992
Alignment:
Q  15 tcaaaatctatggatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgcgttgcatggttaagttggaaatgtgaatttgcaaatt 114  Q
    |||||||| ||||||||| ||||| ||| ||||| ||| ||| | | || ||||  |||||| ||||||  |  |||||  ||||| || |||||||| |    
T  11015815 tcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagt 11015914  T
Q  115 gaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 192  Q
     | |||||||||||| ||  ||| || ||||||||| ||| ||||||  || ||||||||||||||||||||||||||    
T  11015915 tatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaaca 11015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 47452278 - 47452371
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctca 189  Q
    |||||||  ||||||||  ||||||||||||||| |||||||||| ||||| |||||||||||||   ||  |||||||||||||| |||||||    
T  47452278 aaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctca 47452371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 11006333 - 11006454
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    ||||| || |||||||| |||||||||||||||| ||  |||||| |||||||||  |||||||||  ||  || ||||||||||| ||||||||||  |    
T  11006333 aaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaaga 11006432  T
Q  196 attgaatgatcagttcttgagg 217  Q
     ||| ||||||| ||| |||||    
T  11006433 tttgtatgatcaattcatgagg 11006454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 24309892 - 24309830
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa 150  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  24309892 taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaa 24309830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 11977 - 11915
Alignment:
Q  88 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaa 150  Q
    ||||||| ||||||||||||||||| |||  ||||||||||| |||||||||| |||||||||    
T  11977 taagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaa 11915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 21015483 - 21015362
Alignment:
Q  96 aaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 195  Q
    ||||||||| ||||||| || |  | |||||||| ||||||| ||||||||||||  |||||||||  ||  |||||| | |||||||||||||||| ||    
T  21015483 aaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaa 21015384  T
Q  196 attgaatgatcagttcttgagg 217  Q
     | | ||||||| |||||||||    
T  21015383 ttaggatgatcaattcttgagg 21015362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  119 atcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcacc 179  Q
    |||| |||||| ||||| ||| ||||||||||  || |||||| |||||||||||||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 21426100 - 21426041
Alignment:
Q  89 aagttggaaatgtgaatttgcaaattgaggatcagagataatagaaaaccataacttaca 148  Q
    |||||| ||||||||| ||| ||| ||||||| |||||| ||||||| ||||||||||||    
T  21426100 aagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca 21426041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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