View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_28 (Length: 257)

Name: NF11658_low_28
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_28
NF11658_low_28
[»] chr6 (5 HSPs)
chr6 (58-257)||(33629286-33629485)
chr6 (115-174)||(3445462-3445521)
chr6 (115-175)||(21610998-21611058)
chr6 (117-180)||(2285671-2285734)
chr6 (115-178)||(20771614-20771677)
[»] chr8 (6 HSPs)
chr8 (114-251)||(42456865-42457003)
chr8 (121-180)||(16677125-16677184)
chr8 (116-177)||(38753828-38753889)
chr8 (115-180)||(40832890-40832955)
chr8 (134-180)||(5920877-5920923)
chr8 (117-180)||(41581029-41581093)
[»] chr3 (6 HSPs)
chr3 (116-180)||(48723331-48723395)
chr3 (116-193)||(35442657-35442734)
chr3 (116-180)||(51380940-51381004)
chr3 (116-177)||(39028104-39028165)
chr3 (121-180)||(54524927-54524986)
chr3 (124-180)||(31984474-31984529)
[»] chr4 (6 HSPs)
chr4 (116-249)||(18489601-18489734)
chr4 (116-257)||(24699380-24699522)
chr4 (119-175)||(21512002-21512058)
chr4 (113-180)||(9672093-9672160)
chr4 (116-180)||(12868411-12868475)
chr4 (115-175)||(28752839-28752899)
[»] chr1 (6 HSPs)
chr1 (116-245)||(68935-69064)
chr1 (116-180)||(28108100-28108164)
chr1 (121-180)||(22023123-22023182)
chr1 (114-173)||(46916026-46916085)
chr1 (115-175)||(25993128-25993188)
chr1 (127-155)||(46878155-46878183)
[»] chr2 (6 HSPs)
chr2 (116-180)||(27249850-27249914)
chr2 (125-180)||(29699592-29699647)
chr2 (116-180)||(5357659-5357723)
chr2 (125-181)||(12037297-12037353)
chr2 (125-179)||(42013368-42013422)
chr2 (116-165)||(25271727-25271776)
[»] chr5 (2 HSPs)
chr5 (115-174)||(37283757-37283816)
chr5 (120-180)||(10315699-10315759)
[»] chr7 (3 HSPs)
chr7 (116-155)||(2729916-2729955)
chr7 (120-180)||(5897653-5897713)
chr7 (120-153)||(28442338-28442371)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 33629286 - 33629485
Alignment:
Q  58 aaggaagcccaatcaaatgtttggaatgaaaattcaaggcccgcaataaataaataaagaagaatgttgttcacacttcactcaatgctaggaaacactg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  33629286 aaggaagcccaatcaaatgtttggaatgaaaattcaaggcccgcaataaataaataaagaagaatgttgttcacacttcactcaatgctaggaaacaata 33629385  T
Q  158 gtaatttaccaatataacctcattagtattaactgctgattgatttctaccgatggcagttaattgtcgctaggcatttacgtctttttctgatatgttt 257  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||| | |||||||||||||| || |||||| |||||||||||||||||||| |||||    
T  33629386 gtaatttaccaatataatctcatcaatattaactgctgattgatttttgccgatggcagttaactgacgctagacatttacgtctttttctgatgtgttt 33629485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 3445521 - 3445462
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataa 174  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||    
T  3445521 agaagaatgttgttcacacttcacacaatgctaggaaatactagtaatttatcaatataa 3445462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 21610998 - 21611058
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataac 175  Q
    ||||||||||||||||||||||||||||| |||| ||| ||| |||||||| |||||||||    
T  21610998 agaagaatgttgttcacacttcactcaatactagaaaatactagtaatttatcaatataac 21611058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 2285734 - 2285671
Alignment:
Q  117 aagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||| ||||||| |||||| || ||||||| ||||||||| ||||    
T  2285734 aagaatgttgttcacacttcacttaatgctatgaaacattgataatttatcaatataacttcat 2285671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 20771614 - 20771677
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctc 178  Q
    ||||| |||||||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||    
T  20771614 agaaggatgttgttcacacttcactcaatgctagaaaatactagaaatttatcaatataacctc 20771677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 42457003 - 42456865
Alignment:
Q  114 aagaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcattagt-attaactgctgattgatttctaccgatg 212  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||  || |||| ||| |||| |||||  ||||| |    
T  42457003 aagaagaatgttgttcacacttcacttaatgctaggaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccgacg 42456904  T
Q  213 gcagttaattgtcgctaggcatttacgtctttttctgat 251  Q
    | |||||||||||| | | || |||||||||||||||||    
T  42456903 gtagttaattgtcgatggacaattacgtctttttctgat 42456865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 16677184 - 16677125
Alignment:
Q  121 atgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||||    
T  16677184 atgttgttcacacttcactcaatgctaggaaacaccagtaatttacctacataacctcat 16677125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 38753889 - 38753828
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacct 177  Q
    ||||||||||| |||||||| ||||||||||| |||||| | |||||||| |||||||||||    
T  38753889 gaagaatgttgctcacacttgactcaatgctaagaaacattagtaatttatcaatataacct 38753828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 40832890 - 40832955
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||| ||| |||||||||||||||| |||  ||||||| ||| |||||||||||||||||||||||    
T  40832890 agaataatattgttcacacttcactaaatattaggaaatactagtaatttaccaatataacctcat 40832955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 5920923 - 5920877
Alignment:
Q  134 ttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  5920923 ttcactcaatgctaggaaacaccagtactttaccaatataatctcat 5920877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 41581029 - 41581093
Alignment:
Q  117 aagaatgttgttcacacttcactcaatgct-aggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||| |||||||| |  ||| | |||||||||| ||||||||| ||||    
T  41581029 aagaatgttgttcacacttcattcaatgctaaaaaaataatggtaatttatcaatataacttcat 41581093  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 48723331 - 48723395
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  48723331 gaagaatgttgttcacacttcactcaatgctatgaaacactggtaatttaccaatataatctcat 48723395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 35442657 - 35442734
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcattagtattaactgc 193  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||   ||||||||||    
T  35442657 gaagaatgttgttcacacttcactcaatgctagaaaacactgataatttaccaatgtaacctcatcgatattaactgc 35442734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 51380940 - 51381004
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  51380940 gaagaatgttgttcacacttcactcaatgctaggaaacactagtaatttatcaatataacatcat 51381004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 39028104 - 39028165
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacct 177  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||    
T  39028104 gaagaatgttgttcacacttcaatcaatgctagaaaacactagtaatttacaaatataacct 39028165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 54524927 - 54524986
Alignment:
Q  121 atgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||| ||||||| ||| || |||||| |||||||||||||    
T  54524927 atgttgttcacacttcactcaatgttaggaaatactagttatttactaatataacctcat 54524986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 31984529 - 31984474
Alignment:
Q  124 ttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||| ||||||||||||||||||||||||   |||||||| |||||||| ||||    
T  31984529 ttgttcaaacttcactcaatgctaggaaacac-cataatttacaaatataacatcat 31984474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 18489601 - 18489734
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcattagta-ttaactgctgattgatttctaccgatggc 214  Q
    ||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||  ||||  | | |||||||||||| |||||  ||||| |||    
T  18489601 gaagaatgttgttcatacttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcagttaactgctgatggattttaaccgacggc 18489700  T
Q  215 agttaattgtcgctaggcatttacgtctttttctg 249  Q
    |||||| ||| | ||| |||||| |||||||||||    
T  18489701 agttaactgt-gatagacatttatgtctttttctg 18489734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 257
Target Start/End: Complemental strand, 24699522 - 24699380
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcattagta-ttaactgctgattgatttctaccgatggc 214  Q
    |||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| ||||| ||||  ||| |||||||| ||| |||||  || |  |||    
T  24699522 gaagaatgttcttcacacttcaatcaattctaggaaacactagtaatttatcaacataacatcatcggtagttaactgccgatggattttaactggcggc 24699423  T
Q  215 agttaattgtcgctaggcatttacgtctttttctgatatgttt 257  Q
    |||||| || || | | |||||||||||||||||| |||||||    
T  24699422 agttaactggcgatggacatttacgtctttttctggtatgttt 24699380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 21512002 - 21512058
Alignment:
Q  119 gaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataac 175  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  21512002 gaatgttgttcacacttcactcaatgctaggaaacactactaatttatcaatataac 21512058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 9672093 - 9672160
Alignment:
Q  113 aaagaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||| |||||||| |||||||||||| | ||||||||| |||||||||| ||||    
T  9672093 aaagaagaatgttgttcatacttcacttaatgctaggaaatattggtaatttcccaatataacttcat 9672160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 12868411 - 12868475
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||||||| |||||    
T  12868411 gaagaatgttgttcacacttcactcaatgttagaaaacattagtaatttatcaatataatctcat 12868475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 28752839 - 28752899
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataac 175  Q
    |||| ||||||||||||||||||||||||| || |||| ||   |||||||||||||||||    
T  28752839 agaataatgttgttcacacttcactcaatggtaagaaataccattaatttaccaatataac 28752899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 69064 - 68935
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcattagta-ttaactgctgattgatttctaccgatggc 214  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||  ||| |||| || ||||  ||||  ||||| | |    
T  69064 gaagaatgttgttcacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcggtagttaagtg-tgatgaattttaaccgacgac 68966  T
Q  215 agttaattgtcgctaggcatttacgtctttt 245  Q
    |||||| ||||| ||| ||||||||||||||    
T  68965 agttaactgtcgatagacatttacgtctttt 68935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 28108100 - 28108164
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||    
T  28108100 gaagaatgttgttcacacttcactcagtactaggaaacactagtaatttaccaatataacttcat 28108164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 22023123 - 22023182
Alignment:
Q  121 atgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||||| | ||||||  |||||||||| ||||||||||||    
T  22023123 atgttgttcacacttcactcaatgctggaaaacaccagtaatttacctatataacctcat 22023182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 46916085 - 46916026
Alignment:
Q  114 aagaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatata 173  Q
    ||||| ||||||||||||| ||||||| ||| ||||||||||  ||||||||||||||||    
T  46916085 aagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaatata 46916026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 25993188 - 25993128
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataac 175  Q
    ||||||||||||||||||||||| |||||| ||| |||||   ||||||||  ||||||||    
T  25993188 agaagaatgttgttcacacttcattcaatgttagaaaacataagtaatttataaatataac 25993128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 46878155 - 46878183
Alignment:
Q  127 ttcacacttcactcaatgctaggaaacac 155  Q
    |||||||||||||||||||||||||||||    
T  46878155 ttcacacttcactcaatgctaggaaacac 46878183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 27249914 - 27249850
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  27249914 gaagaatgttgttcacacttcactcaatgttaggaaacactagtaatttatcaatataacttcat 27249850  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 29699647 - 29699592
Alignment:
Q  125 tgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  29699647 tgttcacacttcactcaatgttaggaaacactagtaatttaccaatataacctcat 29699592  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 5357723 - 5357659
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||||||||||||||||||| |   ||||||| |||||||||||||||||||||||    
T  5357723 gaagaatgttgttcacacttcactcaatgttgaaaaacactagtaatttaccaatataacctcat 5357659  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 12037297 - 12037353
Alignment:
Q  125 tgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcatt 181  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  12037297 tgttcacacttcactcaatgctaggaaacaccagtaatttatcaatataacctcatt 12037353  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 42013368 - 42013422
Alignment:
Q  125 tgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctca 179  Q
    ||||||| |||||||||||||||||||||||  |||||||| |||| ||| ||||    
T  42013368 tgttcacgcttcactcaatgctaggaaacaccagtaatttatcaatttaatctca 42013422  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 25271727 - 25271776
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacactggtaattta 165  Q
    ||||||||||||||||||||||||| ||  ||| ||||||| ||||||||    
T  25271727 gaagaatgttgttcacacttcactcgatattagaaaacactagtaattta 25271776  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 37283816 - 37283757
Alignment:
Q  115 agaagaatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataa 174  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  37283816 agaaaaatgttgttcacacttcactcaatgctaggaaacacgagtaatttatcaatataa 37283757  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 10315699 - 10315759
Alignment:
Q  120 aatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    |||||||||||||||||||||||||||  |||||||   |||||||| |||||||||||||    
T  10315699 aatgttgttcacacttcactcaatgctgagaaacaccaataatttactaatataacctcat 10315759  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 2729955 - 2729916
Alignment:
Q  116 gaagaatgttgttcacacttcactcaatgctaggaaacac 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2729955 gaagaatgttgttcacacttcactcaatgctaggaaacac 2729916  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 5897713 - 5897653
Alignment:
Q  120 aatgttgttcacacttcactcaatgctaggaaacactggtaatttaccaatataacctcat 180  Q
    ||||||||||||| ||||||| |||||| |||||||  |||||||| ||||||||| ||||    
T  5897713 aatgttgttcacatttcactcgatgctaagaaacaccagtaatttatcaatataacttcat 5897653  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 28442338 - 28442371
Alignment:
Q  120 aatgttgttcacacttcactcaatgctaggaaac 153  Q
    ||||||| ||||||||||||||||||||||||||    
T  28442338 aatgttgctcacacttcactcaatgctaggaaac 28442371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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