View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_33 (Length: 243)

Name: NF11658_low_33
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_33
NF11658_low_33
[»] chr7 (3 HSPs)
chr7 (3-83)||(47022867-47022947)
chr7 (166-218)||(47022298-47022350)
chr7 (72-150)||(47022368-47022440)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 47022947 - 47022867
Alignment:
Q  3 tatctcccaaacaaacaccccattggagtaacatttgtattatgtggtatttgctgattctaatgaaactcttcataatct 83  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47022947 tatctcccaaacaaacaccccgttagagtaacatttgtagtatgtggtatttgctgattctaatgaaactcttcataatct 47022867  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 47022350 - 47022298
Alignment:
Q  166 tcttcaaaatgaatgcgaaactaagaaatcaaagttaaattcttccaataata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47022350 tcttcaaaatgaatgcgaaactaagaaatcaaagttaaattcttccaataata 47022298  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 47022440 - 47022368
Alignment:
Q  72 tcttcataatctgatattggtatgtaagtgtaagtcacatgttttacatatagnnnnnnnnaacttcattcatacttgt 150  Q
    |||||||||||||||||||||||||      ||||||||||||||||||||||        ||||||||||||||||||    
T  47022440 tcttcataatctgatattggtatgt------aagtcacatgttttacatatagttttttttaacttcattcatacttgt 47022368  T

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