View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_34 (Length: 241)
Name: NF11658_low_34
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1985086 - 1985308
Alignment:
| Q |
1 |
ttaaacaaccttatacacatcaatatcaacacatcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaa |
100 |
Q |
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| T |
1985086 |
ttaaacaaccttatacacatcaatatcaacacatcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaa |
1985185 |
T |
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| Q |
101 |
tttgattctcaagcatcacaatatccctcaaaattgcattaggagataatctcctcccaacatagttcacaaaatgagacatgttggaagaaattacctt |
200 |
Q |
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| T |
1985186 |
tttgattctcaagcatcacaatatccctcaaaattgcattaggagataatctcctcccaacatagttcacaaaatgagacatgttggaagaaattacctt |
1985285 |
T |
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| Q |
201 |
tcttgattcttcttgcatggcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1985286 |
tcttgattcttcttgcatggcat |
1985308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 1948180 - 1948098
Alignment:
| Q |
59 |
agaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcatta |
141 |
Q |
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| T |
1948180 |
agaatttgaactcaagcaattttctcaaaacaaataacggaatttgattctcgagcataacaatgtctctcaacatcgcatta |
1948098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 1978171 - 1978308
Alignment:
| Q |
1 |
ttaaacaaccttatacacatcaatatcaacacatcatcagcattttcttctgatgaaaagaattttaactcaagcatctttctcaaaacaaataatggaa |
100 |
Q |
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| T |
1978171 |
ttaaacaaacctataaacatgaaaatcaacatttcatcagcagcttcttttgatga---gagtttgaactcaagcaattttctcaaaaccattaatggaa |
1978267 |
T |
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| Q |
101 |
tttgattctcaagcatcacaatatccctcaaaattgcatta |
141 |
Q |
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| T |
1978268 |
tttgattctcaagcataacaatgtctttcaacattgcatta |
1978308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 5625226 - 5625128
Alignment:
| Q |
60 |
gaattttaactcaagcatctttctcaaaacaaataatggaatttgattctcaagcatcacaatatccctcaaaattgcattaggagataatctcctccc |
158 |
Q |
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|||||| ||||| | |||||||||||||| |||||| || |||||||| |||||||| || || || |||| ||||||||| || |||| ||||||| |
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| T |
5625226 |
gaatttaaactccaacatctttctcaaaataaataaagggatttgattttcaagcattactatgtctttcaagattgcattatgacctaatttcctccc |
5625128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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