View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_35 (Length: 240)
Name: NF11658_low_35
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 9645462 - 9645290
Alignment:
| Q |
51 |
ttacatacaagttgcatgtaagaaacgtgtttaaggtgagtgttagattccaaagcgttgagaagaagctgtttccatgctatgctccccattcccaatt |
150 |
Q |
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| T |
9645462 |
ttacatacaagttgcatgtaagaaacgtgtttaaggtgagtgttagattccaaagcgttgagaagaagctgtttccatgctatgctccccattcccaatt |
9645363 |
T |
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| Q |
151 |
cttcctatgccgtttcttcttctgtaccattgattttacaatttacacttaaaaaacagctgatagtttgtta |
223 |
Q |
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| T |
9645362 |
cttcctatgccgtttcttcgtctgtaccattgattttacaatttacacttaaaaaacagctgatagtttgtta |
9645290 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9645521 - 9645490
Alignment:
| Q |
1 |
aaatcgtaaaaatgaattaaagataattaaat |
32 |
Q |
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| T |
9645521 |
aaatcgtaaaaatgaattaaagataattaaat |
9645490 |
T |
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