View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11658_low_37 (Length: 236)
Name: NF11658_low_37
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11658_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2793885 - 2793664
Alignment:
| Q |
1 |
atgccctaataggtaatccagagcctagnnnnnnnntattcattaggaaaagaaatgcttggaagcatcatgactttnnnnnnnntaaatcttctataga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
2793885 |
atgccctaataggtaatccagagcctagaaaaaaa-tattcattaggaaaagaaatgcttggaagcatcatgactttaaaaaaaatacatcttctataga |
2793787 |
T |
|
| Q |
101 |
tgaaaataaccatgcaaaatacctttccaaccggacaagaaatcggataacatatgatcattaatatccgcacaagccatgcaaaataagcaccgacggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793786 |
tgaaaataaccatgcaaaatacctttccaaccggacaagaaatcggataacatatgatcattaatatccgcacaagccatgcaaaataagcaccgacggc |
2793687 |
T |
|
| Q |
201 |
aagaccatttctactacaaattg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2793686 |
aagaccatttctactacaaattg |
2793664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 48668336 - 48668232
Alignment:
| Q |
119 |
atacctttccaaccggacaagaaatcggataacatatgatcattaatatccgcacaagccatgcaaaataagcaccgacggcaagaccatttctactaca |
218 |
Q |
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||||||||||||| || | |||| ||||||||||| | |||||| |||||||||||||||||||| | |||||| ||||||||||||| ||||||||| |
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| T |
48668336 |
atacctttccaactgggtaggaaactggataacatataaccattaagatccgcacaagccatgcaaagttagcacctacggcaagaccatatctactaca |
48668237 |
T |
|
| Q |
219 |
aattg |
223 |
Q |
| |
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||||| |
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|
| T |
48668236 |
aattg |
48668232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 16389127 - 16389023
Alignment:
| Q |
119 |
atacctttccaaccggacaagaaatcggataacatatgatcattaatatccgcacaagccatgcaaaataagcaccgacggcaagaccatttctactaca |
218 |
Q |
| |
|
||||||||||||||||| | |||| || || ||||| |||||||| || ||||||||||||| ||| | ||||| || |||||||||| ||||||||| |
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| T |
16389127 |
atacctttccaaccggatacgaaagagggtagcatataatcattaaaatacgcacaagccatgaaaagttggcacctacagcaagaccatatctactaca |
16389028 |
T |
|
| Q |
219 |
aattg |
223 |
Q |
| |
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||||| |
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|
| T |
16389027 |
aattg |
16389023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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