View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_39 (Length: 224)

Name: NF11658_low_39
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_39
NF11658_low_39
[»] chr7 (5 HSPs)
chr7 (1-224)||(13951143-13951366)
chr7 (42-162)||(606395-606515)
chr7 (42-162)||(615490-615610)
chr7 (99-224)||(13931898-13932023)
chr7 (8-92)||(13909089-13909173)
[»] scaffold0096 (1 HSPs)
scaffold0096 (42-162)||(48678-48798)
[»] chr5 (3 HSPs)
chr5 (42-162)||(728701-728821)
chr5 (42-162)||(6332438-6332558)
chr5 (42-162)||(719721-719841)
[»] chr4 (4 HSPs)
chr4 (42-162)||(111811-111931)
chr4 (42-162)||(120907-121027)
chr4 (42-162)||(3474081-3474201)
chr4 (42-162)||(14916208-14916328)
[»] scaffold0028 (1 HSPs)
scaffold0028 (40-95)||(81479-81534)
[»] chr2 (1 HSPs)
chr2 (40-95)||(24988816-24988871)
[»] chr1 (1 HSPs)
chr1 (40-95)||(21758932-21758987)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13951143 - 13951366
Alignment:
Q  1 tggacaaatactacaggtggttttatgctcttagtttcttatgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagct 100  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  13951143 tggacaaatactacaagtggttttatgctcttagttttttatgtctccaataccactacacttccaatcaaatggtaaaagtaagtacaaacaaatatct 13951242  T
Q  101 tcttttagctgtaagagaaacaaggaacaaaatggatgctagctattaatttgcatatatgtgtaccttcttaatccaaatgtctaaacgtggcaattgt 200  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||     
T  13951243 tcttttggctgtaagaggaacaaggaacaaaatggatgctagctattaatttgcatatatgtgtaccttcttcacccaaatgtctacacgtggaaattga 13951342  T
Q  201 aagaagatatatgcgttgagagtt 224  Q
    ||||||||| ||| |||| |||||    
T  13951343 aagaagataaatgagttgtgagtt 13951366  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 606395 - 606515
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  606395 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 606494  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  606495 gctgtaagtttccatatatgt 606515  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 615490 - 615610
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  615490 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 615589  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  615590 gctgtaagtttccatatatgt 615610  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 13931898 - 13932023
Alignment:
Q  99 cttcttttagctgtaagagaaacaaggaacaaaatggatgctagctattaatttgcatatatgtgtaccttcttaatccaaatgtctaaacgtggcaatt 198  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||    
T  13931898 cttcttttggctgtaagaggaacaaggaacaaaatgcatgctagctattaatttgcatatatgtgtaccttcttcacccaaatgtctacacgtggaaatt 13931997  T
Q  199 gtaagaagatatatgcgttgagagtt 224  Q
    | ||||||||| ||| |||| |||||    
T  13931998 gaaagaagataaatgagttgtgagtt 13932023  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 13909089 - 13909173
Alignment:
Q  8 atactacaggtggttttatgctcttagtttcttatgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaac 92  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13909089 atactacaagtggttttatgctcttagtttcttatgtctccaataccactacatttccaatcaaatggtaaaagcaagtacaaac 13909173  T

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Target: scaffold0096 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 48678 - 48798
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  48678 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 48777  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  48778 gctgtaagtttccatatatgt 48798  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 728821 - 728701
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  728821 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 728722  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  728721 gctgtaagtttccatatatgt 728701  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 6332558 - 6332438
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  6332558 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 6332459  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  6332458 gctgtaagtttccatatatgt 6332438  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 719841 - 719721
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  719841 tgtctccaatatcactacacttccaatcaaatggtaaaagcaaggacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 719742  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  719741 gctgtaagtttccatatatgt 719721  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 111811 - 111931
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  111811 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 111910  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  111911 gctgtaagtttccatatatgt 111931  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 120907 - 121027
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  120907 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 121006  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  121007 gctgtaagtttccatatatgt 121027  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 3474201 - 3474081
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |    
T  3474201 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatcttcttttggctataagaggaacaaggaacaaaatggatgcaa 3474102  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  3474101 gctgtaagtttccatatatgt 3474081  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 14916208 - 14916328
Alignment:
Q  42 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatagcttcttttagctgtaagagaaacaaggaacaaaatggatgcta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||| |||||||||||||||||||||||    
T  14916208 tgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaatatattcttttggctataagaggaacaaggaacaaaatggatgcta 14916307  T
Q  142 gctattaatttgcatatatgt 162  Q
    ||| | | ||| |||||||||    
T  14916308 gctgtaagtttccatatatgt 14916328  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 81479 - 81534
Alignment:
Q  40 tatgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaa 95  Q
    ||||||||||| |||||||||| |||||||||| |   ||||||||||||||||||    
T  81479 tatgtctccaaaaccactacacatccaatcaaaagaggaaagcaagtacaaacaaa 81534  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 24988816 - 24988871
Alignment:
Q  40 tatgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaa 95  Q
    ||||||||||| |||||||||| |||||||||| |   ||||||||||||||||||    
T  24988816 tatgtctccaaaaccactacacatccaatcaaaagaggaaagcaagtacaaacaaa 24988871  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 21758932 - 21758987
Alignment:
Q  40 tatgtctccaataccactacacttccaatcaaatggtaaaagcaagtacaaacaaa 95  Q
    ||||||||||| |||||||||| |||||||||| |   ||||||||||||||||||    
T  21758932 tatgtctccaaaaccactacacatccaatcaaaagaggaaagcaagtacaaacaaa 21758987  T

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