View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_40 (Length: 219)

Name: NF11658_low_40
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_40
NF11658_low_40
[»] chr6 (2 HSPs)
chr6 (1-181)||(33630416-33630594)
chr6 (36-94)||(34430773-34430831)
[»] chr4 (4 HSPs)
chr4 (15-96)||(15173236-15173317)
chr4 (24-84)||(27330018-27330078)
chr4 (167-208)||(47854267-47854308)
chr4 (173-209)||(1139147-1139183)
[»] chr7 (4 HSPs)
chr7 (24-96)||(19022527-19022599)
chr7 (167-209)||(7873494-7873536)
chr7 (15-95)||(19302496-19302576)
chr7 (34-82)||(48470114-48470162)
[»] chr2 (6 HSPs)
chr2 (29-84)||(40682342-40682397)
chr2 (170-208)||(21024748-21024786)
chr2 (176-209)||(21633354-21633387)
chr2 (179-208)||(23280918-23280947)
chr2 (172-209)||(44078576-44078613)
chr2 (173-209)||(35921153-35921189)
[»] chr1 (1 HSPs)
chr1 (173-208)||(7764468-7764503)
[»] chr8 (3 HSPs)
chr8 (124-165)||(900825-900866)
chr8 (15-84)||(15247710-15247779)
chr8 (176-208)||(26920003-26920035)
[»] chr5 (1 HSPs)
chr5 (15-80)||(12433106-12433171)
[»] chr3 (2 HSPs)
chr3 (171-208)||(54716465-54716502)
chr3 (176-208)||(40410162-40410194)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 33630416 - 33630594
Alignment:
Q  1 aaggaaaatttacctatttgaagttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgacgactttcataagnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||        
T  33630416 aaggaaaatttacctatttgaagttatttacttacataagttttatgagattgtttaagaaaatttattaaaataacttatgacgactttcataag--tt 33630513  T
Q  101 nnnnnnccgtatacctaacagcctaagtgtatataatggtaagcgtttgtgctataagatgcaaacaagtagtttatttta 181  Q
          | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33630514 ttttctctgtatgcctaacagcctaagtgtatataatggtaagcgtttgtgctataagatgcaaacaagtagtttatttta 33630594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 34430831 - 34430773
Alignment:
Q  36 ataagttttatgagattgtttgggaaaatttattaaaataacttatgacgactttcata 94  Q
    ||||||||| | ||||||||||||| ||||||| |||| |||||||||| | |||||||    
T  34430831 ataagttttgtaagattgtttgggataatttatgaaaacaacttatgacaattttcata 34430773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 15173236 - 15173317
Alignment:
Q  15 tatttgaagttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgacgactttcataag 96  Q
    |||||||| |||| |||| ||||||||||| ||||| ||||||||| | ||||| |||||| |||||||| | |||||||||    
T  15173236 tatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaatagcttatgacaattttcataag 15173317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 27330018 - 27330078
Alignment:
Q  24 ttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgac 84  Q
    |||| ||||||||||||||| ||||||||||||| ||  |||||| |||| ||||||||||    
T  27330018 ttatctacttacataagtttaatgagattgtttgagaggatttatgaaaacaacttatgac 27330078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 47854308 - 47854267
Alignment:
Q  167 aagtagtttattttaggcttaattgcacttttgtccccctat 208  Q
    ||||||||| |||||||||||||||||||||||  |||||||    
T  47854308 aagtagtttgttttaggcttaattgcacttttggacccctat 47854267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 1139147 - 1139183
Alignment:
Q  173 tttattttaggcttaattgcacttttgtccccctatg 209  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  1139147 tttattttaagcttaattgcacttttgaccccctatg 1139183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 19022527 - 19022599
Alignment:
Q  24 ttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgacgactttcataag 96  Q
    |||| |||| |||| |||||| ||||||||||||||| ||||||| |||| |||||||||| | |||||||||    
T  19022527 ttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgacaattttcataag 19022599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 7873494 - 7873536
Alignment:
Q  167 aagtagtttattttaggcttaattgcacttttgtccccctatg 209  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  7873494 aagtagtttattttaggcttaattgcagttttgaccccctatg 7873536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 19302496 - 19302576
Alignment:
Q  15 tatttgaagttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgacgactttcataa 95  Q
    |||||||  |||| |||| ||||||||||| ||||| | ||||||| ||||||| |||| | |||||||| | ||||||||    
T  19302496 tatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaattttcataa 19302576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 48470162 - 48470114
Alignment:
Q  34 acataagttttatgagattgtttgggaaaatttattaaaataacttatg 82  Q
    ||||||||||||||||||||||||||| || |||| |||| | ||||||    
T  48470162 acataagttttatgagattgtttgggagaacttatgaaaacagcttatg 48470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 40682342 - 40682397
Alignment:
Q  29 tacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgac 84  Q
    |||| ||||||||||| ||||||||||||||| || || |||||||| ||||||||    
T  40682342 tactgacataagttttgtgagattgtttgggagaacttgttaaaatagcttatgac 40682397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 21024786 - 21024748
Alignment:
Q  170 tagtttattttaggcttaattgcacttttgtccccctat 208  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  21024786 tagtttactttaggcttaattgcacttttgaccccctat 21024748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 21633387 - 21633354
Alignment:
Q  176 attttaggcttaattgcacttttgtccccctatg 209  Q
    |||||||||||||||||||||||| |||||||||    
T  21633387 attttaggcttaattgcacttttggccccctatg 21633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 23280947 - 23280918
Alignment:
Q  179 ttaggcttaattgcacttttgtccccctat 208  Q
    ||||||||||||||||||||||||||||||    
T  23280947 ttaggcttaattgcacttttgtccccctat 23280918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 44078613 - 44078576
Alignment:
Q  172 gtttattttaggcttaattgcacttttgtccccctatg 209  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  44078613 gtttattttaggtttaattgcacttttggccccctatg 44078576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 35921189 - 35921153
Alignment:
Q  173 tttattttaggcttaattgcacttttgtccccctatg 209  Q
    |||| |||||| |||||||||||||||||||||||||    
T  35921189 tttaatttaggtttaattgcacttttgtccccctatg 35921153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 7764503 - 7764468
Alignment:
Q  173 tttattttaggcttaattgcacttttgtccccctat 208  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7764503 tttattttaggcttaattgcacttttggccccctat 7764468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 900825 - 900866
Alignment:
Q  124 taagtgtatataatggtaagcgtttgtgctataagatgcaaa 165  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||    
T  900825 taagtgtttatcatgataagcgtttgtgctataagatgcaaa 900866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 15247710 - 15247779
Alignment:
Q  15 tatttgaagttatttacttacataagttttatgagattgtttgggaaaatttattaaaataacttatgac 84  Q
    |||||||| |||| |||||||||||||||| ||||| ||  |  |||||||||| |||| ||||||||||    
T  15247710 tatttgaatttatctacttacataagttttgtgagaatgaataagaaaatttatgaaaacaacttatgac 15247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 26920035 - 26920003
Alignment:
Q  176 attttaggcttaattgcacttttgtccccctat 208  Q
    |||||||||||||||||||||||| ||||||||    
T  26920035 attttaggcttaattgcacttttggccccctat 26920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 12433106 - 12433171
Alignment:
Q  15 tatttgaagttatttacttacataagttttatgagattgtttgggaaaatttattaaaataactta 80  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||||| || |||| |||||| ||||    
T  12433106 tatttgaacttatttactggcataggttttgtgagattgtttgggagaagttatgaaaatagctta 12433171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 54716465 - 54716502
Alignment:
Q  171 agtttattttaggcttaattgcacttttgtccccctat 208  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  54716465 agttttttttaggcttaattgcacttttggccccctat 54716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 40410194 - 40410162
Alignment:
Q  176 attttaggcttaattgcacttttgtccccctat 208  Q
    |||||||||||||||||||||||| ||||||||    
T  40410194 attttaggcttaattgcacttttggccccctat 40410162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University