View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_41 (Length: 205)

Name: NF11658_low_41
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_41
NF11658_low_41
[»] chr4 (8 HSPs)
chr4 (1-195)||(7765804-7765998)
chr4 (1-195)||(7786626-7786820)
chr4 (1-184)||(7773541-7773724)
chr4 (1-175)||(7877908-7878082)
chr4 (1-141)||(7908499-7908639)
chr4 (50-111)||(48898954-48899015)
chr4 (1-119)||(7237518-7237636)
chr4 (7-81)||(48863421-48863495)
[»] chr8 (4 HSPs)
chr8 (1-111)||(12195486-12195599)
chr8 (1-111)||(12439914-12440027)
chr8 (47-117)||(4962303-4962373)
chr8 (138-175)||(4962244-4962281)
[»] chr3 (2 HSPs)
chr3 (1-82)||(11015300-11015381)
chr3 (1-105)||(11005714-11005818)
[»] chr6 (1 HSPs)
chr6 (1-105)||(21979423-21979527)
[»] chr5 (1 HSPs)
chr5 (143-175)||(9120067-9120099)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7765804 - 7765998
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765804 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 7765903  T
Q  101 ttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactgatgat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7765904 ttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgat 7765998  T

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Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 7786626 - 7786820
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786626 tttaatggggctattcattggttgtcttcgcgtcgtgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 7786725  T
Q  101 ttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactgatgat 195  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  7786726 ttccaaatgatgttgaccacacagagttggtacattctggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgat 7786820  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 7773724 - 7773541
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||  || | |||| ||||||  ||||||||||| |||||||| |||||||||||||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgatttacgttggaatgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctc 7773625  T
Q  101 ttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctcagtatatgggttaaggata 184  Q
    |||||||| ||||| |||| |  |||||||||||||||||||||||||||| |||||||| ||| ||| |||||| ||||||||    
T  7773624 ttccaaataatgttcaccatagtgcattggtacattctggtttgtgggtatttggagaatatcttagtgtatgggctaaggata 7773541  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7877908 - 7878082
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||||||| | ||||||||||| ||| ||||| | || ||| || |  ||||||| ||  ||||||||||| ||||| || |||||||||||||||||    
T  7877908 tttaatggggttgttcattggttggctttgcgtcgtaatttaggttggattgtcattcttacctttgatttaatggaaaagaaattgtttgagatgcctc 7878007  T
Q  101 ttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctcagtatatggg 175  Q
    |||||||| |||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||| ||||||    
T  7878008 ttccaaataatgttgaccatagagcattagtacattctggtttgtgggtatttggagaatttctcagtctatggg 7878082  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7908499 - 7908639
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||||| | ||||||||||||| |||  |||| |||| ||| ||||  ||||||||||| ||||||||||| ||||||||  ||||||||||| |||     
T  7908499 tttaatggtgttattcattggttggctttacgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaaggaagttgtttgagataccta 7908598  T
Q  101 ttccaaatgatgttgaccacacagcattggtacattctggt 141  Q
    |||||| |||| ||| ||||| |||||  | ||||||||||    
T  7908599 ttccaagtgattttgtccacagagcatcaggacattctggt 7908639  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 48898954 - 48899015
Alignment:
Q  50 atgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgat 111  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||| ||| |||| |||||    
T  48898954 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgat 48899015  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7237636 - 7237518
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||||||| |||||||||| |  |||  || | |||| ||| |||||||||||| ||||   ||||||||| ||||| || |  |||||||||||||     
T  7237636 tttaatggggttattcattggcttgcttatcgccgtgatttagatttggatgtcatagttgcgcttgatttaatggaaaagaaaacgtttgagatgcctg 7237537  T
Q  101 ttccaaatgatgttgacca 119  Q
    |||||| |||| |||||||    
T  7237536 ttccaagtgattttgacca 7237518  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 48863421 - 48863495
Alignment:
Q  7 ggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagg 81  Q
    |||||||||||||||||| |||  ||||||||||||| | |  |||| ||||||| ||||  |||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacggaaagg 48863495  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12195486 - 12195599
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgata---tagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgc 97  Q
    |||||||||||||||||||||||| |||| | | || |||   || | ||||| || ||||||| ||||||||||| |||||||| |||||| ||||| |    
T  12195486 tttaatggggctattcattggttggcttctccttatcataaaataccattggaagttattgttgtctttgatttaatggaaaggaaattgttagagatac 12195585  T
Q  98 ctcttccaaatgat 111  Q
    |||||||| |||||    
T  12195586 ctcttccagatgat 12195599  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12439914 - 12440027
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgata---tagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgc 97  Q
    |||||||||||||||||||||||| |||| | | || |||   || | ||||| || ||||||| ||||||||||| |||||||| |||||| ||||| |    
T  12439914 tttaatggggctattcattggttggcttctccttatcataaaataccattggaagttattgttgtctttgatttaatggaaaggaaattgttagagatac 12440013  T
Q  98 ctcttccaaatgat 111  Q
    |||||||| |||||    
T  12440014 ctcttccagatgat 12440027  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 4962373 - 4962303
Alignment:
Q  47 tggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgac 117  Q
    ||||||| ||| ||| ||||||||||| |||||||| |||||| |||||||||||||| |||||| |||||    
T  4962373 tggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgac 4962303  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 4962281 - 4962244
Alignment:
Q  138 tggtttgtgggtatctggagaatttctcagtatatggg 175  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggg 4962244  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11015381 - 11015300
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 82  Q
    ||||||||| ||||||||||||| ||||  || |||||| || |  ||||||| ||||||||||||||||||  ||||||||    
T  11015381 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaagga 11015300  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 11005818 - 11005714
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    ||||||||| ||||||||||||| ||||  || |||||| |  |  ||||||| ||||||||||||||||||  |||||||| | | || |||||||||     
T  11005818 tttaatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcctt 11005719  T
Q  101 ttcca 105  Q
    |||||    
T  11005718 ttcca 11005714  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21979527 - 21979423
Alignment:
Q  1 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctc 100  Q
    |||||| ||||||||||||||||| |||  ||  ||||| || || ||  ||| ||||||| |||||||||||  ||||||| | | |||||||| ||||    
T  21979527 tttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcctttgatttaatagaaaggaaactttttgagatccctc 21979428  T
Q  101 ttcca 105  Q
    |||||    
T  21979427 ttcca 21979423  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 9120067 - 9120099
Alignment:
Q  143 tgtgggtatctggagaatttctcagtatatggg 175  Q
    ||||||||| |||||||||||||||||||||||    
T  9120067 tgtgggtatttggagaatttctcagtatatggg 9120099  T

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