View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11658_low_5 (Length: 573)

Name: NF11658_low_5
Description: NF11658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11658_low_5
NF11658_low_5
[»] chr5 (3 HSPs)
chr5 (25-565)||(5978228-5978773)
chr5 (310-402)||(1360436-1360520)
chr5 (374-432)||(33487318-33487376)
[»] chr6 (3 HSPs)
chr6 (372-432)||(2325125-2325185)
chr6 (373-430)||(30062456-30062512)
chr6 (314-348)||(21802688-21802722)
[»] chr1 (1 HSPs)
chr1 (374-434)||(41967479-41967539)
[»] scaffold0068 (1 HSPs)
scaffold0068 (314-348)||(59217-59251)
[»] chr7 (2 HSPs)
chr7 (314-348)||(19156342-19156376)
chr7 (314-348)||(20755741-20755775)
[»] chr4 (2 HSPs)
chr4 (374-432)||(12765106-12765164)
chr4 (314-348)||(30969873-30969907)


Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 25 - 565
Target Start/End: Complemental strand, 5978773 - 5978228
Alignment:
Q  25 tacttacaaaggagaagaaaaaggaaaggaataat--------------aaagatggagggtcatagggtaccttttggtcaaatgatgccaaagaaagt 110  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5978773 tacttacaaaggagaagaaaaaggaaaggaataataaagggacattgataaagatggagggtcatagggtaccttttggtcaaatgatgccaaagaaagt 5978674  T
Q  111 aaagaaagaataatgtgatagtggatggtttggtccactaataggtgactgtggtgtcacgttaacttctctcatc-tttgtctttgttacttttaccgt 209  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5978673 aaagaaagaataatgtgatggtggatggtttggtccactactaggtgactgtggtgtcacgttaacttctctcatcttttgtctttgttacttttaccgt 5978574  T
Q  210 ccaaagcaagatgactaattgaccgtgagagtgtatgtgtaataataacactggtacagtaacttactaaataccgctttattagtagtaattctcatac 309  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5978573 ccaaagcaagatgactaattgaccgtgagagtgtatgtg---taataacactggtacagtaacttactaaataccgctttattagtagtaattctcatac 5978477  T
Q  310 atattttaaatactaactaaacacattttctcagtaaacttgggaatcaaattcccataatcccatccttatattcttagaaaaattattcccagaatta 409  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||        |||||||||||||||| || |||||||||| |||||||||    
T  5978476 atattttaaatactaactaaacacattttctcagtaaatttgagaatcaaat--------tcccatccttatattcctaaaaaaattatttccagaatta 5978385  T
Q  410 tattttataaacttaaaacaaacgctctcttaaagttttgattagtcaaaaatagttattgattaaccatgtatttatgttttgtggatgagt-gggggg 508  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  5978384 tattttataaacttgaaacaaacgttctcttaaagttttgattaatcaaaaatagttattgattaaccatgtatttatgttttgtgggtgagtggggggg 5978285  T
Q  509 tgtaaatttaatttttcatgattctattttcttttccaacctttcatacttcatctc 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5978284 tgtaaatttaatttttcatgattctattttcttttccaacctttcatgcttcttctc 5978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 1360520 - 1360436
Alignment:
Q  310 atattttaaatactaactaaacacattttctcagtaaacttgggaatcaaattcccataatcccatccttatattcttagaaaaattattccc 402  Q
    ||||||||||||||||| |||||||||| |||||||||  ||||||| ||||        || ||||||||||||||||||||||||||||||    
T  1360520 atattttaaatactaaccaaacacatttgctcagtaaatctgggaataaaat--------tctcatccttatattcttagaaaaattattccc 1360436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 33487318 - 33487376
Alignment:
Q  374 atccttatattcttagaaaaattattcccagaattatattttataaacttaaaacaaac 432  Q
    ||||||||||||  |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  33487318 atccttatattccaagaaaaattattgccagaattacattttataaacttcaaacaaac 33487376  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 2325125 - 2325185
Alignment:
Q  372 ccatccttatattcttagaaaaattattcccagaattatattttataaacttaaaacaaac 432  Q
    ||||| ||||||||| ||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  2325125 ccatcgttatattctcagaaaaattatccccaaaattatattttgtaaacttgaaacaaac 2325185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 30062456 - 30062512
Alignment:
Q  373 catccttatattcttagaaaaattattcccagaattatattttataaacttaaaacaa 430  Q
    |||||||||||||| |  |||||||||||||| |||||||||||||||||| ||||||    
T  30062456 catccttatattctcaagaaaattattcccag-attatattttataaacttgaaacaa 30062512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 21802688 - 21802722
Alignment:
Q  314 tttaaatactaactaaacacattttctcagtaaac 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  21802688 tttaaatactaaccaaacacattttctcagtaaac 21802722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 41967479 - 41967539
Alignment:
Q  374 atccttatattcttagaaaaattattcccagaattatattttataaacttaaaacaaacgc 434  Q
    |||||||||||| ||| |||||||||||||  |||||||||| ||||||| ||||||||||    
T  41967479 atccttatattcctaggaaaattattcccaatattatattttgtaaacttgaaacaaacgc 41967539  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 59251 - 59217
Alignment:
Q  314 tttaaatactaactaaacacattttctcagtaaac 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  59251 tttaaatactaaccaaacacattttctcagtaaac 59217  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 19156376 - 19156342
Alignment:
Q  314 tttaaatactaactaaacacattttctcagtaaac 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  19156376 tttaaatactaaccaaacacattttctcagtaaac 19156342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 20755775 - 20755741
Alignment:
Q  314 tttaaatactaactaaacacattttctcagtaaac 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  20755775 tttaaatactaaccaaacacattttctcagtaaac 20755741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 12765164 - 12765106
Alignment:
Q  374 atccttatattcttagaaaaattattcccagaattatattttataaacttaaaacaaac 432  Q
    ||||||||||| | | ||||||||||| ||| |||||||||| ||||||| ||||||||    
T  12765164 atccttatattttcaaaaaaattattctcaggattatattttgtaaacttgaaacaaac 12765106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 30969873 - 30969907
Alignment:
Q  314 tttaaatactaactaaacacattttctcagtaaac 348  Q
    ||||||||||||| |||||||||||||||||||||    
T  30969873 tttaaatactaaccaaacacattttctcagtaaac 30969907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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