View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11659_high_7 (Length: 255)
Name: NF11659_high_7
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11659_high_7 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 7582462 - 7582248
Alignment:
| Q |
33 |
aagagttataaacaattagcttcaacaa-aaaccctaatttctaccattttttaatctattcccctaaacaagagattcaaatattttctttccaaatgt |
131 |
Q |
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| T |
7582462 |
aagaattataaacaattagcttcaacaagaaaccctaatttctaccatttcttaatctatttccctaaacaagagattcaaatattttctttccaaatgt |
7582363 |
T |
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| Q |
132 |
ttgtaaaagatttcccaacccaagactctaccacacaaaatgttatttggacaacagacaataatttggttgtcttttctccttctcaaatcctagccgt |
231 |
Q |
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| T |
7582362 |
ttgtaaaagatttcccaacccaaggctctaccacacaaaatgttatttggacaacaaacaataatttggttgtcttttctccttctcaaatcctagccgt |
7582263 |
T |
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| Q |
232 |
cacaacttttcttct |
246 |
Q |
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| T |
7582262 |
aacaacttttcttct |
7582248 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 40702368 - 40702411
Alignment:
| Q |
204 |
tcttttctccttctcaaatcctagccgtcacaacttttcttctc |
247 |
Q |
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| T |
40702368 |
tcttttctccttctcaaaccctagccgtcaccacctttcttctc |
40702411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 978 - 936
Alignment:
| Q |
204 |
tcttttctccttctcaaatcctagccgtcacaacttttcttct |
246 |
Q |
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| T |
978 |
tcttttctctttctcaaatcctagccgttataacttttcttct |
936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 8717 - 8675
Alignment:
| Q |
204 |
tcttttctccttctcaaatcctagccgtcacaacttttcttct |
246 |
Q |
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| T |
8717 |
tcttttctctttctcaaatcctagccgttataacttttcttct |
8675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 38431698 - 38431654
Alignment:
| Q |
202 |
tgtcttttctccttctcaaatcctagccgtcacaacttttcttct |
246 |
Q |
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| T |
38431698 |
tgtcttttctccttcccaaacccttgccgtcaccacttttcttct |
38431654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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