View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11659_low_1 (Length: 660)
Name: NF11659_low_1
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11659_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 308 - 573
Target Start/End: Complemental strand, 31565719 - 31565454
Alignment:
| Q |
308 |
aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
407 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565719 |
aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
31565620 |
T |
|
| Q |
408 |
aagctttcactttttagatatatgcataacttataaagtaaatttcacaatatttgtatactgtaatcaaagagtgtctatccttgaatagatcaatgat |
507 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31565619 |
aagctttcactttttagatatatgcataacttatagagtaaatttcacaatatttgtatactgtaatcaaagagtggctatccttgaatagatcaatgat |
31565520 |
T |
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| Q |
508 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565519 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
31565454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 118 - 281
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
| Q |
118 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31565883 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa |
31565784 |
T |
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| Q |
218 |
acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa |
281 |
Q |
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| T |
31565783 |
acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa |
31565718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 31566042 - 31565922
Alignment:
| Q |
1 |
gagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31566042 |
gagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaa |
31565943 |
T |
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| Q |
101 |
gagcaaaagaaagttgataag |
121 |
Q |
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| T |
31565942 |
gagcaaaagaaagttgataag |
31565922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 465 - 576
Target Start/End: Original strand, 33413910 - 33414021
Alignment:
| Q |
465 |
atactgtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaa |
564 |
Q |
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||||| ||| ||||||||| ||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
33413910 |
atactataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaa |
33414009 |
T |
|
| Q |
565 |
caattcagacct |
576 |
Q |
| |
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||||||| |||| |
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| T |
33414010 |
caattcaaacct |
33414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 576
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
| Q |
494 |
aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
576 |
Q |
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|
||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33351038 |
aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 645
Target Start/End: Original strand, 33414090 - 33414169
Alignment:
| Q |
566 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga |
645 |
Q |
| |
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||||||| |||||| ||||||| ||| ||||||| |||||||||| || | ||| |||||||||||||||||||||||| |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatga |
33414169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 33413817 - 33413867
Alignment:
| Q |
391 |
actttatcgcttcctttaagctttcactttttagatatatgcataacttat |
441 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
33413817 |
actttatcgctccctttaagcttccacttcttagatatacgcataacttat |
33413867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 646
Target Start/End: Complemental strand, 31565451 - 31565420
Alignment:
| Q |
615 |
ttggcgtctaatcaacatttggttattatgat |
646 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31565451 |
ttggcgtctaatcaacatttggttattatgat |
31565420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 33351212 - 33351261
Alignment:
| Q |
596 |
tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga |
645 |
Q |
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|||| ||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
33351212 |
tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatga |
33351261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 502 - 576
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
| Q |
502 |
aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
576 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446233 |
aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 17446348 - 17446284
Alignment:
| Q |
390 |
aactttatcgcttcctttaagctttcactttttagatatatgcataacttataaagtaaatttca |
454 |
Q |
| |
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|||||||| ||||||||||||||| ||||| ||||||| |||||||||||| || |||||||| |
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| T |
17446348 |
aactttattgcttcctttaagcttccacttcccagatatacgcataacttatagagcaaatttca |
17446284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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