View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11659_low_2 (Length: 653)
Name: NF11659_low_2
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11659_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 51525671 - 51525913
Alignment:
| Q |
18 |
gacatgagtattatttaccccaccaataccatgagtatattacttggacactaggagaaccatatattttgcgctaaatgaacaatgatactcccattgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525671 |
gacatgagtattatttaccccaccaataccatgagtatattacttggacactaggagaaccatatattttgcgctaaatgaacaatgatactcccattgt |
51525770 |
T |
|
| Q |
118 |
catcattgcatcaagaattaaaatgttgtttgattgattgcaaggttctttcaacttatgctttctgtctcccaaaaactatgaaaatgttggcattagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525771 |
catcattgcatcaagaattaaaatgttgtttgattgattgcaaggttctttcaacttatgctttctgtctcccaaaaactatgaaaatgttggcattagt |
51525870 |
T |
|
| Q |
218 |
aaactcaaagcctgctgatacggcaaataaggatccatttact |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51525871 |
aaactcaaagcctgctgatacggcaaataaggatccatatact |
51525913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 476 - 653
Target Start/End: Original strand, 51526101 - 51526288
Alignment:
| Q |
476 |
tccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaatatattatgtcatgttttt |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51526101 |
tccaccggcttttaaatgagtaacgtaacctataacctcaccaaagcgtcacttgcaatgcacctcccctataactacaaacatattatgtcatgttttt |
51526200 |
T |
|
| Q |
576 |
tggattaagctagcagcgcgcattttgtgactcaacgagagctagaag----------tgaagagtgatactctaattcattcatttc |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51526201 |
tggattaagctagcagcgcgcattttgtgactcaacgagagctagaagtgaagtgaagtgaagagtgatactctaattcattcatttc |
51526288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University