View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11659_low_3 (Length: 567)

Name: NF11659_low_3
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11659_low_3
NF11659_low_3
[»] chr6 (5 HSPs)
chr6 (20-551)||(34848151-34848687)
chr6 (494-542)||(29892972-29893020)
chr6 (497-544)||(6708103-6708150)
chr6 (497-544)||(31079621-31079668)
chr6 (488-544)||(8356958-8357014)
[»] chr8 (4 HSPs)
chr8 (183-320)||(42729445-42729582)
chr8 (497-544)||(28876628-28876675)
chr8 (488-544)||(37668582-37668638)
chr8 (488-544)||(43771766-43771822)
[»] chr4 (10 HSPs)
chr4 (180-264)||(44300607-44300691)
chr4 (497-544)||(5325783-5325830)
chr4 (497-544)||(38492321-38492368)
chr4 (497-544)||(52122931-52122978)
chr4 (177-227)||(4386753-4386803)
chr4 (498-543)||(3403638-3403683)
chr4 (497-542)||(41145621-41145666)
chr4 (497-537)||(2586345-2586385)
chr4 (488-544)||(42472631-42472687)
chr4 (488-544)||(55901201-55901257)
[»] chr2 (5 HSPs)
chr2 (497-544)||(6124182-6124229)
chr2 (488-542)||(43214572-43214626)
chr2 (488-544)||(2319275-2319331)
chr2 (488-544)||(6497711-6497767)
chr2 (488-544)||(35342317-35342373)
[»] chr7 (3 HSPs)
chr7 (497-543)||(27398110-27398156)
chr7 (484-537)||(49015135-49015188)
chr7 (488-544)||(11058349-11058405)
[»] chr5 (6 HSPs)
chr5 (497-542)||(9792328-9792373)
chr5 (177-217)||(29564910-29564950)
chr5 (488-544)||(41392774-41392830)
chr5 (497-544)||(1639844-1639891)
chr5 (497-526)||(11694228-11694257)
chr5 (505-542)||(32624894-32624931)
[»] chr1 (7 HSPs)
chr1 (488-544)||(36367754-36367810)
chr1 (497-544)||(3426857-3426904)
chr1 (505-544)||(9528901-9528940)
chr1 (497-544)||(38948741-38948788)
chr1 (505-542)||(9092547-9092584)
chr1 (168-216)||(12134774-12134822)
chr1 (496-544)||(28659362-28659410)
[»] scaffold0112 (1 HSPs)
scaffold0112 (497-544)||(42127-42174)
[»] chr3 (2 HSPs)
chr3 (497-544)||(37996873-37996920)
chr3 (497-544)||(47642026-47642073)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Complemental strand, 34848687 - 34848151
Alignment:
Q  20 tgaaatgcatatttcatgattaagaacgaagaannnnnnn-atatacataaattaagaaaggagtgctagttagttgatcatgaaatattatataatata 118  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34848687 tgaaatgcatatttcatgattaagaacgaagaattttttttatatatataaattaagaaaggagtgctagttagttggtcatgaaatattatataatata 34848588  T
Q  119 taccatgtcaaagagacttgaacgtctcttcttcttattcaaggttgcaagtcgaataaaatacttttgagcatggcttgcaacttgtgttggtgttctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848587 taccatgtcaaagagacttgaacgtctcttcttcttattcaaggttgcaagtcgaataaaatacttttgagcatggcttgcaacttgtgttggtgttctt 34848488  T
Q  219 gtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848487 gtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactc 34848388  T
Q  319 ctaatgaataaaataacaaaatatc-nnnnnnncttgttagatgttaatttcatttaacattctaaatcaataatttaaaattatagatgaaccacctag 417  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34848387 ctaatgaataaaataacaaaatatcaaaaaaaacttgttagatgttaatttcatttaacattctaaatcaataatttaaaattatagatgaaccacctag 34848288  T
Q  418 aattgattgagaacaaagaaaataaa---tagtaataaagtgtcttcataataaatacatcataggctttctttgaaatccagatactttaaaatggatg 514  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34848287 aattgattgagaacaaagaaaataaatagtagtaataaagtgtcttcataataaatacatcataggctttctttgaaatccatatactttaaaatggatg 34848188  T
Q  515 acgtactgtatcccatgtgtatcttgcacctgatgtc 551  Q
    ||| ||||||||  ||||||||| |||| | ||||||    
T  34848187 acgcactgtatcttatgtgtatcctgcatccgatgtc 34848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 29892972 - 29893020
Alignment:
Q  494 ccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    |||||||||||||||||||||| |||||||||||| || ||||| ||||    
T  29892972 ccagatactttaaaatggatgatgtactgtatcccctgcgtatcctgca 29893020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 6708150 - 6708103
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||||||||||||||||||| || |||||||| |||||||| ||||||    
T  6708150 gatactttaaaatggatgacatattgtatcccctgtgtatcatgcacc 6708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 31079621 - 31079668
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  31079621 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 31079668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 8356958 - 8357014
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  8356958 tgaagtcctgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 8357014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 42729445 - 42729582
Alignment:
Q  183 ttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaa 282  Q
    |||||||||||||| ||||||||||| || ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||||| |||||||| | ||||||||    
T  42729445 ttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaa 42729544  T
Q  283 ggaattttctatgctcttcttctgtccatggaactcct 320  Q
    ||||  |||| |||||||||||||||||||||||||||    
T  42729545 ggaacattctgtgctcttcttctgtccatggaactcct 42729582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 28876675 - 28876628
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  28876675 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 28876628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 37668582 - 37668638
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||| || ||||||| |||||||||||||||| |||| || || ||||||||||||    
T  37668582 tgaaaccccgatacttcaaaatggatgacgtaccgtattccctgcgtatcttgcacc 37668638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 43771822 - 43771766
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||| || ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  43771822 tgaaaccccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 43771766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 44300691 - 44300607
Alignment:
Q  180 tacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaa 264  Q
    |||||||||||||| |||||||| || || |||||||||||  |||||||||| || ||||| || |||||||| ||||||||||    
T  44300691 tacttttgagcatgacttgcaacctgcgtaggtgttcttgttttcacatagttccttgagattcctctccaatcaccttttccaa 44300607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 5325830 - 5325783
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  5325830 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 5325783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 38492368 - 38492321
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  38492368 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 38492321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 52122978 - 52122931
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  52122978 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 52122931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 4386803 - 4386753
Alignment:
Q  177 aaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcaca 227  Q
    ||||||||||||||||| ||||||||||||||| || | ||||| ||||||    
T  4386803 aaatacttttgagcatgacttgcaacttgtgtttgtatccttgttgtcaca 4386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Complemental strand, 3403683 - 3403638
Alignment:
Q  498 atactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 543  Q
    |||||| |||||||||||||||| ||||||| |||||||| |||||    
T  3403683 atacttcaaaatggatgacgtaccgtatcccctgtgtatcctgcac 3403638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 41145621 - 41145666
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||    
T  41145621 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgca 41145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 2586345 - 2586385
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatc 537  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  2586345 gatactttaaaatggatgacgtaccgtatcccctgagtatc 2586385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 42472687 - 42472631
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||| ||||||| ||||||||||||||||||||| || || ||||| ||||||    
T  42472687 tgaagtcccgatacttcaaaatggatgacgtactgtattccctgcgtatcctgcacc 42472631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 55901257 - 55901201
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||| || ||||||||||||| |||||||||  ||||||| |||||||| ||||||    
T  55901257 tgaaaccccgatactttaaaatagatgacgtatcgtatcccctgtgtatcctgcacc 55901201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 6124182 - 6124229
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  6124182 gatactttaaaatggatgacgtattgtatcccctgtgtatcctgcacc 6124229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 43214572 - 43214626
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    |||| ||||||||||| |||||||||||||||  |||||||||||||||| ||||    
T  43214572 tgaagtccagatacttcaaaatggatgacgtatcgtatcccatgtgtatcctgca 43214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 2319275 - 2319331
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||| || ||||||| |||||||||||||||  ||||||| || ||||||||||||    
T  2319275 tgaaaccccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcttgcacc 2319331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 6497767 - 6497711
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  6497767 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 6497711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 35342317 - 35342373
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  35342317 tgaagtcccgatacttcaaaatggatgacgtaccgtatcccttgcgtatcctgcacc 35342373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 27398156 - 27398110
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcac 543  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||    
T  27398156 gatactttaaaatggatgacgtactgtatcccctgcgtatcctgcac 27398110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 49015188 - 49015135
Alignment:
Q  484 tctttgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatc 537  Q
    ||||||||||| |||||||| |||||||||||| ||| ||||| ||||||||||    
T  49015188 tctttgaaatctagatacttcaaaatggatgacataccgtatctcatgtgtatc 49015135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 11058349 - 11058405
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||||| ||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  11058349 tgaagtccaggtacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 11058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 9792328 - 9792373
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||    
T  9792328 gatactttaaaatggatgacgtaccgtatcccctgtgtatcctgca 9792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 29564950 - 29564910
Alignment:
Q  177 aaatacttttgagcatggcttgcaacttgtgttggtgttct 217  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  29564950 aaatacttttgagcatggcttgctacttgagttggtgttct 29564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 41392830 - 41392774
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||||||||||| |||||||||||||||| ||||||| || ||||| ||||||    
T  41392830 tgaagtccagatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 41392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 1639891 - 1639844
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  1639891 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 1639844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 526
Target Start/End: Original strand, 11694228 - 11694257
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatc 526  Q
    ||||||||||||||||||||||||||||||    
T  11694228 gatactttaaaatggatgacgtactgtatc 11694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 32624894 - 32624931
Alignment:
Q  505 aaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  32624894 aaaatggatgacgtaccgtatcccctgtgtatcttgca 32624931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 36367810 - 36367754
Alignment:
Q  488 tgaaatccagatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||| ||| ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  36367810 tgaagtcctgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 36367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 3426857 - 3426904
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  3426857 gatactttaaaatggatgacgtattgtatcccctgcgtatcctgcacc 3426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Complemental strand, 9528940 - 9528901
Alignment:
Q  505 aaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  9528940 aaaatggatgacgtattgtatcccttgtgtatcttgcacc 9528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 38948741 - 38948788
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  38948741 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 38948788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Complemental strand, 9092584 - 9092547
Alignment:
Q  505 aaaatggatgacgtactgtatcccatgtgtatcttgca 542  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9092584 aaaatggatgacgtactgtatcctatgtgtatcctgca 9092547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 12134822 - 12134774
Alignment:
Q  168 agtcgaataaaatacttttgagcatggcttgcaacttgtgttggtgttc 216  Q
    |||||||| || || ||||| ||||||||||| ||||||||||||||||    
T  12134822 agtcgaatgaagtatttttgcgcatggcttgctacttgtgttggtgttc 12134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 28659410 - 28659362
Alignment:
Q  496 agatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||||||||||||||||||||| |||| || || ||||| ||||||    
T  28659410 agatactttaaaatggatgacgtacggtattccctgcgtatcatgcacc 28659362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 42174 - 42127
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  42174 gatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcacc 42127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 37996920 - 37996873
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||||||    
T  37996920 gatactttaaaatggatgacgtaccgtatcccctgcgtatcctgcacc 37996873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 47642026 - 47642073
Alignment:
Q  497 gatactttaaaatggatgacgtactgtatcccatgtgtatcttgcacc 544  Q
    ||||||| |||||||||||||||| |||||||||| ||||| ||||||    
T  47642026 gatacttcaaaatggatgacgtaccgtatcccatgcgtatcctgcacc 47642073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University