View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11659_low_5 (Length: 453)
Name: NF11659_low_5
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11659_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 14754426 - 14754853
Alignment:
| Q |
18 |
ataatactatatacacataccattgttgtggctttgatgatagtatccgaatcaaacccatgaatgtttgttccatcgattgtagaaagcataacatcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
14754426 |
ataatactatatacacataccattgttgtggctttgatgatagtatccgaatcaaacccatgaatgtttgttccgtcgattgtagaaagcataacatcaa |
14754525 |
T |
|
| Q |
118 |
taaaatcttgatcccctttactcttatcatcgccaccattatcccttttcttcttgtgctctttcaaccactctgtcacaacagtatccaactccttaaa |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754526 |
taaaatcatgatcccctttactcttatcatcaccaccatcttcccttttattcttgtgctcattcaaccactctgtcacaacagtatccaactccttaaa |
14754625 |
T |
|
| Q |
218 |
attctccttcatacttttctcatgtccaccaaaatcaaaccaccgcaaaaacggaatagcatcagcaataggaaaaacaccgatcaaacgcatataatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754626 |
attctccttcatacttttctcatgtccaccaaaatcaaaccaccgcaaaaacggaatagcatcagcaataggaaaaacaccgatcaaacgcatataatcc |
14754725 |
T |
|
| Q |
318 |
cttaaagcattcaaacaccgatttgcttcttcctctttaaccatcacactctccccaaaatatctcttcccagcaaccattctaagagcagtattaaaag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754726 |
cttaaagcattcaaacaccgatttgcttcttcctctttaaccatcacactctctccaaaatatctcttcccagcaaccattctaagagcagtattaaaag |
14754825 |
T |
|
| Q |
418 |
ccaactcatgaaaccatttcttcttctc |
445 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
14754826 |
ccaactcatgaaaccacttcttcatctc |
14754853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 31 - 445
Target Start/End: Original strand, 14714004 - 14714415
Alignment:
| Q |
31 |
cacataccattgttgtggctttgatgatagtatccgaatcaaacccatgaatgtttgttccatcgattgtagaaagcataacatcgataaaatcttgatc |
130 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||| | |
|
|
| T |
14714004 |
cacataccattgttgtggctttgatgacagtatccgaatgaaacccatgaatgtttgttccatcaatagtagaaagcatcacatccatgaaatcttgacc |
14714103 |
T |
|
| Q |
131 |
ccctttactcttatcatcgccaccattatcccttttcttcttgtgctctttcaaccactctgtcacaacagtatccaactccttaaaattctccttcata |
230 |
Q |
| |
|
| |||||||||||||| | || || | | | |||||||||||||| | |||||||||||| | |||| |||||||||||||||||| | ||||||| |
|
|
| T |
14714104 |
ctctttactcttatcaacaccttcactcttc---ttcttcttgtgctcatccaaccactctgtgataacaccatccaactccttaaaattttgcttcata |
14714200 |
T |
|
| Q |
231 |
cttttctcatgtccaccaaaatcaaaccaccgcaaaaacggaatagcatcagcaataggaaaaacaccgatcaaacgcatataatcccttaaagcattca |
330 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
14714201 |
ttcttctcatgtccaccaaaatcaaaccacctcaaaaaaggaacagcatcagcaataggaaacacaccagtcaaacgcatgtaatctcttaaagcattca |
14714300 |
T |
|
| Q |
331 |
aacaccgatttgcttcttcctctttaaccatcacactctccccaaaatatctcttcccagcaaccattctaagagcagtattaaaagccaactcatgaaa |
430 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||| || |
|
|
| T |
14714301 |
aacacctattagcttcttcctctttaaccatcacactctccccaaagtatcttttcccagcaaccattctaagaactatattaaaagccaactcatttaa |
14714400 |
T |
|
| Q |
431 |
ccatttcttcttctc |
445 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
14714401 |
ccatttcttcatctc |
14714415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University