View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11659_low_6 (Length: 303)
Name: NF11659_low_6
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11659_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 45934805 - 45934582
Alignment:
| Q |
3 |
gttgtaccagaatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaagaacaatctcaagtat |
102 |
Q |
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| T |
45934805 |
gttgtaccagaatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaaaaacaatctcaagtat |
45934706 |
T |
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| Q |
103 |
tttccctcggacattggagtatttcaggtgttcattttcttcatcccaccaagattcccagctttgatcagatggaataacaataccaccctggtttccc |
202 |
Q |
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| T |
45934705 |
tttccctcggacattggagtatttcagatgttcattttcttcatcccaccaagattcccagctttgatcagatggaataccaataccaccctggtttccc |
45934606 |
T |
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| Q |
203 |
atccaccgcttccaatctgtccag |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
45934605 |
atccaccgcttccaatctgtccag |
45934582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 45934506 - 45934448
Alignment:
| Q |
227 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcgccat |
285 |
Q |
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| T |
45934506 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcaccat |
45934448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15817040 - 15816822
Alignment:
| Q |
1 |
ttgttgtaccagaatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaagaacaatctcaagt |
100 |
Q |
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| T |
15817040 |
ttgttgtaccagaatatttttgctacgacgcgcaatattcaggtggtagacaattccatattggtagataaagaagcggcatgcaagaacaatctcaagt |
15816941 |
T |
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| Q |
101 |
attttccctcggacattggagtatttcaggtgttcattttcttcatcccaccaagattcccagctttgatcagatggaataacaataccaccctggtttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
15816940 |
attttccctcggacattggagtatttcaggtgttcattttcttcatcccaccaagattcccagcttttatcagatggaataccaataccaccacggtttc |
15816841 |
T |
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| Q |
201 |
ccatccaccgcttccaatc |
219 |
Q |
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||||||||||||||||||| |
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| T |
15816840 |
ccatccaccgcttccaatc |
15816822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 15816740 - 15816682
Alignment:
| Q |
227 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcgccat |
285 |
Q |
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||||||||||||||||||||| | ||||| |||||| |||||||| ||||||||||||| |
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| T |
15816740 |
aaaccacattgagattgtgatgaagaaataaagagttgagcttcggtatgattcgccat |
15816682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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