View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11659_low_9 (Length: 250)

Name: NF11659_low_9
Description: NF11659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11659_low_9
NF11659_low_9
[»] chr1 (2 HSPs)
chr1 (1-147)||(8631826-8631982)
chr1 (155-242)||(42078120-42078217)
[»] chr5 (2 HSPs)
chr5 (7-147)||(37609136-37609285)
chr5 (155-242)||(37717587-37717674)
[»] chr3 (1 HSPs)
chr3 (155-242)||(46593265-46593352)
[»] chr6 (1 HSPs)
chr6 (155-237)||(4437491-4437573)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 8631826 - 8631982
Alignment:
Q  1 atgtatgacatttatattatattcgcaataagacaatcgaatataa----------caaaataaatttatcataacttttcactaatataagattttatc 90  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||          |||||||||||||||| |||||||||||||||||||||||||||    
T  8631826 atgtatgatatttatattatattcgcaataagacaatcaaatataatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatc 8631925  T
Q  91 ttacaaaagtagtctaagttataagtttttgttggatggggtaataggaacttgatc 147  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8631926 ttacaaaagtagtctaagttataagtttttgctggatggggtaataggaacttgatc 8631982  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 42078120 - 42078217
Alignment:
Q  155 aaaataatttgccgctgtagccataataaacattagatgcttcg----------ccacatacctttgtagagtagtaattcccaacttgcttcatctc 242  Q
    ||||||||||| |||||||||||||||||||||||||||||| |          | ||||||||||||||||||||||||||||||||||||| ||||    
T  42078120 aaaataatttgtcgctgtagccataataaacattagatgctttgcactctacttcaacatacctttgtagagtagtaattcccaacttgcttcttctc 42078217  T

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Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 37609285 - 37609136
Alignment:
Q  7 gacatttatattatattcgcaataagacaatcgaatataa----------caaaataaatttatcataacttttcactaatataagattttatcttacaa 96  Q
    |||||||||||||||||||||||||||||||| |||||||          |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37609285 gacatttatattatattcgcaataagacaatcaaatataatggaatgaaacaaaataaatttatcacaacttttcactaatataagattttatcttacaa 37609186  T
Q  97 aagtagtctaagttataagtttttgttggatggggtaataggaacttgatc 147  Q
    || |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  37609185 aa-tagtctaagttaaaagtttttgctggatggggtaataggaacttgatc 37609136  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 37717587 - 37717674
Alignment:
Q  155 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37717587 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctc 37717674  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 46593265 - 46593352
Alignment:
Q  155 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46593265 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttcttctc 46593352  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 4437573 - 4437491
Alignment:
Q  155 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4437573 aaaataatttgccgctgtagccataataaacattagatgcttcgccacatacctttgtagagtagtaattcccaacttgcttc 4437491  T

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