View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_high_12 (Length: 251)
Name: NF1165_high_12
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 13155500 - 13155324
Alignment:
| Q |
67 |
tttgccccacaaccctcatcaaataatcatcaaaccaattgtcaaccccgagcccaacatctatatgaataaccactatttatttccgttaacttggccc |
166 |
Q |
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| T |
13155500 |
tttgccccacaaccctcatcaaataatcatcgaaccaattgtcaaccccgagcccaacatctatatgaataaccactatttatttctgttaacttggccc |
13155401 |
T |
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| Q |
167 |
ccaccctcccttcttcacatgaccagtttcctccccatatcgggctgctaaaaccttaaaccaaagggtcctatgct |
243 |
Q |
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| T |
13155400 |
ccaccctcccttcttcacatgaccagtttcctccccatatcgggctgctaaaaccttaaaccaaagggtcctctgct |
13155324 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13155560 - 13155513
Alignment:
| Q |
1 |
aaagacgtttgaatctatctcgtatagtactaccttccaatcattgat |
48 |
Q |
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| T |
13155560 |
aaagacgtctgaatttatctcgtatagtactaccttccaatcattgat |
13155513 |
T |
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