View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1165_high_4 (Length: 598)

Name: NF1165_high_4
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1165_high_4
NF1165_high_4
[»] chr7 (4 HSPs)
chr7 (227-444)||(41204097-41204314)
chr7 (130-199)||(41204344-41204413)
chr7 (471-508)||(16262699-16262736)
chr7 (471-508)||(21820191-21820228)
[»] chr5 (2 HSPs)
chr5 (66-199)||(32505134-32505268)
chr5 (227-276)||(32505065-32505115)
[»] chr2 (8 HSPs)
chr2 (66-199)||(26811995-26812127)
chr2 (471-546)||(997820-997895)
chr2 (471-569)||(4453778-4453875)
chr2 (472-524)||(3625182-3625234)
chr2 (227-276)||(26811928-26811978)
chr2 (471-508)||(9208570-9208607)
chr2 (471-508)||(7161816-7161853)
chr2 (388-444)||(26811770-26811829)
[»] chr1 (6 HSPs)
chr1 (471-546)||(1721556-1721631)
chr1 (471-570)||(7608342-7608440)
chr1 (471-570)||(31771330-31771428)
chr1 (471-508)||(32440666-32440703)
chr1 (471-508)||(22368216-22368253)
chr1 (478-546)||(17726039-17726107)
[»] scaffold0152 (1 HSPs)
scaffold0152 (466-546)||(10190-10269)
[»] chr8 (2 HSPs)
chr8 (471-566)||(44663643-44663737)
chr8 (471-569)||(35348991-35349089)
[»] chr4 (5 HSPs)
chr4 (471-546)||(32651249-32651324)
chr4 (473-546)||(3649873-3649945)
chr4 (470-505)||(26720236-26720271)
chr4 (471-546)||(38467690-38467765)
chr4 (471-508)||(41810171-41810208)
[»] chr3 (4 HSPs)
chr3 (471-546)||(19766014-19766088)
chr3 (471-508)||(46233980-46234017)
chr3 (471-508)||(11394018-11394055)
chr3 (472-546)||(52130790-52130864)
[»] chr6 (3 HSPs)
chr6 (471-508)||(31444771-31444808)
chr6 (471-505)||(27444127-27444161)
chr6 (471-508)||(33054180-33054217)
[»] scaffold0003 (2 HSPs)
scaffold0003 (471-546)||(36988-37062)
scaffold0003 (471-505)||(43200-43234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (471-505)||(32615-32649)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 41204314 - 41204097
Alignment:
Q  227 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtgaattgtgattatattgggcagaagaacctaataannnnnnnnaagggaaa 325  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||    
T  41204314 cttaatttaacttcatttcatgtagttttgttccatcatgtatagttgtgaattgtgattatattggacagaagaacctaataattttttttaagggaaa 41204215  T
Q  326 aacctaatcatgtatagtaccttttttatatgggnnnnnnnggatggnnnnnnnnnncttagaaccatatatgggaaagtggtagaaagtttaggccaca 425  Q
    ||||||||||||||||||| ||||||||||||||       ||| ||          | |||||||||||||| ||||||||||||||||||||||||||    
T  41204214 aacctaatcatgtatagtagcttttttatatggg-ttttttggaaggaaaaaaaaaacgtagaaccatatatgagaaagtggtagaaagtttaggccaca 41204116  T
Q  426 aggcattacattcaaatat 444  Q
    |||||||||||||||||||    
T  41204115 aggcattacattcaaatat 41204097  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 41204413 - 41204344
Alignment:
Q  130 ttataatattaatccggtgttttttcattcatttctttactcattggtgtaccattgttattcctactat 199  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  41204413 ttataatattgatccggtgttttttcattcatttctttactcaatgttgtaccattgttattcctactat 41204344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 16262736 - 16262699
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16262736 atctaacttattcctaatcctagttaacacttcaatta 16262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 21820228 - 21820191
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaatta 21820191  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 32505268 - 32505134
Alignment:
Q  66 aataatatgataagagtgtgtataattgtaccaattatatataattataaagatctattttacattataatattaatccggtg-ttttttcattcatttc 164  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||  |||||||| |||||| |||||||||||| |||  ||| ||||||| ||||||||    
T  32505268 aataatatgataagagtatgtataattgtaccaatcatatctaaacataaagatttattttgcattataatattgatcttgtgtttttttctttcatttc 32505169  T
Q  165 tttactcattggtgtaccattgttattcctactat 199  Q
     ||||||||||||||||||||||||||||||||||    
T  32505168 cttactcattggtgtaccattgttattcctactat 32505134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 32505115 - 32505065
Alignment:
Q  227 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtga 276  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32505115 cttaatttaacttcatttcatgtagttttgttccatcatatatagttgtga 32505065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 26812127 - 26811995
Alignment:
Q  66 aataatatgataagagtgtgtataattgtaccaattatatataattataaagatctattttacattataatattaatccggtgttttttcattcatttct 165  Q
    ||||||||||||| ||| |||||||||||| |||| |||| |||  ||||| ||||||||| |||||||||||| |||  |||||||| | |||||||||    
T  26812127 aataatatgataatagtatgtataattgtatcaatcatatctaaacataaatatctattttgcattataatattgatcatgtgttttt-ctttcatttct 26812029  T
Q  166 ttactcattggtgtaccattgttattcctactat 199  Q
    |||||||||||||||||||||||| |||||||||    
T  26812028 ttactcattggtgtaccattgttaatcctactat 26811995  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 997820 - 997895
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  997820 atctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattctgctgtttttaggcgccaa 997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 569
Target Start/End: Original strand, 4453778 - 4453875
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaactaatatcaacccttggatctaa 569  Q
    |||||||||||||||||||||||||||||||||||||| |  |   ||||||||||||| || |||||||||||||  ||||| |||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattcta-tgattttaggcgccaatcaatattaacccttggatctaa 4453875  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 3625182 - 3625234
Alignment:
Q  472 tctaacttattcctaatcctagttaacactccaattagccatgccaaccctaa 524  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  3625182 tctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 26811978 - 26811928
Alignment:
Q  227 cttaatttaacttcatttcatgtagttttgttccat-atgtatagttgtga 276  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26811978 cttaatttaacttcatttcatgtagttttgttccatcatgtatagttgtga 26811928  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 9208570 - 9208607
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaatta 9208607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 7161816 - 7161853
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7161816 atctaacttatttctaatcctagttaacactccaatta 7161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 26811829 - 26811770
Alignment:
Q  388 aaccatatatgggaa-agtggtagaaagttta--ggccacaaggcattacattcaaatat 444  Q
    ||||||||||||||| |||||||| |||||||  ||||||||| |||| |||||||||||    
T  26811829 aaccatatatgggaagagtggtaggaagtttaaaggccacaagacattgcattcaaatat 26811770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 1721556 - 1721631
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    |||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattctactgtttttaggcgccaa 1721631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 570
Target Start/End: Complemental strand, 7608440 - 7608342
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaactaatatcaacccttggatctaat 570  Q
    ||||||||||||||||||||||||||| ||||||| || |  | |||||||||||||| ||| |||||||||||||| ||| ||| ||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctg-ttttaggcgccaacaaatctcagcccttggatctaat 7608342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 570
Target Start/End: Complemental strand, 31771428 - 31771330
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaactaatatcaacccttggatctaat 570  Q
    ||||||||||||||||||||||||||||||||||| || |  | |||||||||||||| ||| |||||||||||||| ||  ||| ||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctg-ttttaggcgccaacaaacctcagcccttggatctaat 31771330  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 32440703 - 32440666
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaatta 32440666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 22368253 - 22368216
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22368253 atctaacttattcctaatcctagttaacacttcaatta 22368216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 546
Target Start/End: Original strand, 17726039 - 17726107
Alignment:
Q  478 ttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    ||||||||||||||||||||||||||||||| |  |   |||||||||||||   ||||||||||||||    
T  17726039 ttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaa 17726107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 10190 - 10269
Alignment:
Q  466 attgcatctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||| ||||||||||||||    
T  10190 attgcatctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctact-tttttaggcgccaa 10269  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 471 - 566
Target Start/End: Complemental strand, 44663737 - 44663643
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaactaatatcaacccttggatc 566  Q
    |||||||||||||||||||||||||||||||||||||| |  |   ||||||||||||| || |||||||||||||  ||||| | ||||||||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattcta-tgattttaggcgccaatcaatattagcccttggatc 44663643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 569
Target Start/End: Original strand, 35348991 - 35349089
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaactaatatcaacccttggatctaa 569  Q
    |||||||||||| ||||||||||||||||||||||||| |  |   || ||||||||||||  |||||||||||||  | |||||||| || |||||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaatcagtatcaaccatttgatctaa 35349089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 32651324 - 32651249
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    |||||||||||||||||||||||||||||||||||||| |  |   |||||||||||||   ||||||||||||||    
T  32651324 atctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaa 32651249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 546
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  473 ctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    |||||||||||||||||||||||||||||||||||| |  |   |||||||| |||||| ||||||||||||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctact-tttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 26720236 - 26720271
Alignment:
Q  470 catctaacttattcctaatcctagttaacactccaa 505  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720236 catctaacttattcctaatcctagttaacactccaa 26720271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 38467765 - 38467690
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    ||||||||||||  |||||||||||||||||||||||| |  |   |||||||||||||||  |||||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 41810171 - 41810208
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    |||||||||||| |||||||||||||||||||||||||    
T  41810171 atctaacttatttctaatcctagttaacactccaatta 41810208  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 19766014 - 19766088
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    |||||||||||| ||||||||||||||||||||||||| |  | | ||||||||| ||||| ||||||||||||||    
T  19766014 atctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctact-tttttaggcgccaa 19766088  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 46234017 - 46233980
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaatta 46233980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 11394018 - 11394055
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    |||||||||||| |||||||||||||||||||||||||    
T  11394018 atctaacttatttctaatcctagttaacactccaatta 11394055  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 546
Target Start/End: Original strand, 52130790 - 52130864
Alignment:
Q  472 tctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    ||||||||||| |||||||||| |||||||||||||| |  |   |||||||||||||   ||||||||||||||    
T  52130790 tctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaa 52130864  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 31444771 - 31444808
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31444771 atctaacttattcctaatcctagttaacactccaatta 31444808  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 27444127 - 27444161
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaa 505  Q
    ||||||||||||||||||| |||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaa 27444161  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 33054217 - 33054180
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaatta 508  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  33054217 atctaacttattcctaatcctaattaacactacaatta 33054180  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 37062 - 36988
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaattagccatgccaaccctaattctactgtttttaggcgccaa 546  Q
    |||||||||||||||||||||| ||||||||||||||| |  | | || ||||||||| || ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttct-tttttaggcgccaa 36988  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Complemental strand, 43234 - 43200
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaa 505  Q
    ||||||||||||||||||| |||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaa 43200  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 32615 - 32649
Alignment:
Q  471 atctaacttattcctaatcctagttaacactccaa 505  Q
    |||||||||||| ||||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaa 32649  T

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