View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1165_high_7 (Length: 466)

Name: NF1165_high_7
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1165_high_7
NF1165_high_7
[»] chr3 (7 HSPs)
chr3 (8-437)||(37486013-37486420)
chr3 (42-137)||(25638518-25638613)
chr3 (15-126)||(40291729-40291840)
chr3 (8-126)||(13843416-13843534)
chr3 (13-126)||(50874669-50874782)
chr3 (13-126)||(50327375-50327488)
chr3 (48-123)||(44415144-44415219)
[»] scaffold0196 (1 HSPs)
scaffold0196 (8-312)||(7694-7994)
[»] chr8 (5 HSPs)
chr8 (8-137)||(9540727-9540856)
chr8 (8-137)||(15255568-15255697)
chr8 (13-137)||(33237415-33237545)
chr8 (15-126)||(4884306-4884417)
chr8 (84-123)||(27115576-27115615)
[»] chr4 (8 HSPs)
chr4 (8-133)||(35259037-35259162)
chr4 (8-117)||(34441964-34442068)
chr4 (15-126)||(23392000-23392111)
chr4 (15-126)||(49705221-49705332)
chr4 (8-97)||(27512058-27512147)
chr4 (48-118)||(15666999-15667069)
chr4 (13-94)||(48511700-48511781)
chr4 (8-108)||(45621643-45621743)
[»] chr7 (5 HSPs)
chr7 (204-351)||(32027565-32027712)
chr7 (14-123)||(11354355-11354464)
chr7 (8-90)||(32027422-32027504)
chr7 (8-123)||(31846476-31846591)
chr7 (8-89)||(46401173-46401254)
[»] chr5 (3 HSPs)
chr5 (8-137)||(42545143-42545272)
chr5 (13-123)||(31506823-31506933)
chr5 (13-123)||(8466453-8466563)
[»] chr2 (4 HSPs)
chr2 (8-137)||(45369217-45369346)
chr2 (8-118)||(24133868-24133978)
chr2 (15-126)||(43178291-43178402)
chr2 (13-126)||(17562860-17562973)
[»] chr6 (4 HSPs)
chr6 (8-137)||(8635326-8635455)
chr6 (8-123)||(1800234-1800349)
chr6 (13-113)||(29489437-29489537)
chr6 (75-118)||(29396821-29396864)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 37486420 - 37486013
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37486420 atatcaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 37486321  T
Q  108 caaaccgaaccgaaccgaagcataaccataatatctcttatttttcagagcagttctcaaattgaaaccaaatgaaaatgaaaccaaatgaaccctaatc 207  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37486320 caaaccgaaccgaaccgaaccataaccataatacctcttatttttcatagcagttctcaaattgaaaccaaatgaaaatgaaaccaaatgaaccctaatc 37486221  T
Q  208 aatgaatatattcccaaattgataaaccctaaatcgatctcaaccataaattgatgaacatgattcctaaattgatgaaccctaatcaatctcaactcta 307  Q
     |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||                     |||||||||||||||||||||||    
T  37486220 gatgaatatattcccaaattgatgaaccctaaattgatctcaaccctaaattgatg---------------------aaccctaatcaatctcaactcta 37486142  T
Q  308 aatcgttctcaactacccaaatcgacctcaacttttctcatttttctcattcttgttcagttgttgtgaagaggaatcgattatgagaagaagcgatttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37486141 aatcgttctcaactacccaaatcgacctcaacttttctca-ctttctcattcttgttcagttgttgtgaagaggaatcgattatgagaagaagcgatttt 37486043  T
Q  408 aaagggacgatacattgaaaacgcgaagag 437  Q
    ||||||||||||||||||||||||||||||    
T  37486042 aaagggacgatacattgaaaacgcgaagag 37486013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 25638518 - 25638613
Alignment:
Q  42 tgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccgaaccgaaccgaagcataaccata 137  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  || ||||||||||    
T  25638518 tgaactgaaccattatttttataacagttaattaaccgaaccgaaccattaataaccacagttatccaaaccaaaccaaacttaaccataaccata 25638613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 40291729 - 40291840
Alignment:
Q  15 aattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccg 114  Q
    ||||||||||||||||| || | ||  ||||| ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| |||||| |||||    
T  40291729 aattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaaccacaattatccgaaccg 40291828  T
Q  115 aaccgaaccgaa 126  Q
    |||| |||||||    
T  40291829 aaccaaaccgaa 40291840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 13843534 - 13843416
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| ||||||||||||||||||| || | ||   |||| |||||||||||| |||| || || | ||||||||| ||||| ||| |||||||| |||||    
T  13843534 atatcaaaattaactgaaccatttaaccatttctcgaaccgaaccattatttggataacaattcactaaccgaactgaaccgttagtaaccacaattatc 13843435  T
Q  108 caaaccgaaccgaaccgaa 126  Q
    | ||||||||| |||||||    
T  13843434 cgaaccgaaccaaaccgaa 13843416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 50874669 - 50874782
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    ||||||||||||||||||| |||| |||  ||||  |||||||||||||||| || || | |||| |||| ||||| ||| |||||||| |||||| |||    
T  50874669 aaaattaactgaaccatttaacaaattttcgaaccaaaccattattttgataacaattcactaacggaactgaaccgttagtaaccacaattatccgaac 50874768  T
Q  113 cgaaccgaaccgaa 126  Q
    | ||| ||||||||    
T  50874769 caaactgaaccgaa 50874782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 50327375 - 50327488
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    |||||||| |||||||||| || | ||   |||| ||||||||||||||||| || || | ||||||||| ||||| ||| |||||||| |||||| |||    
T  50327375 aaaattaattgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaaccgttagtaaccacaattatccgaac 50327474  T
Q  113 cgaaccgaaccgaa 126  Q
     |||| ||||||||    
T  50327475 ggaactgaaccgaa 50327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 44415144 - 44415219
Alignment:
Q  48 gaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccgaaccgaacc 123  Q
    ||||||||||||||||| ||  | | ||||||||| ||||| ||| |||||||| |||||| ||||||||| ||||    
T  44415144 gaaccattattttgataacaactcactaaccgaactgaaccgttagtaaccacaattatccgaaccgaaccaaacc 44415219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 7994 - 7694
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  7994 atatcaaaattaactgaaccatttcacaaatttatgaactgaactattattttgataacagttaattaaccgaaccgaagcattaataacgacagttatc 7895  T
Q  108 caaaccgaaccgaaccgaagcataaccat-------aatatctcttatttttcagagcagttctcaaattgaaaccaaatgaaaatgaaaccaaatgaac 200  Q
    ||||||||| ||||||||| |||||||||       |||| |||||||||||||||| ||||||||||||||||||||||||||||||         |||    
T  7894 caaaccgaatcgaaccgaaccataaccatataacacaatacctcttatttttcagagaagttctcaaattgaaaccaaatgaaaatga---------aac 7804  T
Q  201 cctaatcaatgaatatattcccaaattgataaaccctaaatcgatctcaaccataaattgatgaacatgattcctaaattgatgaaccctaatcaatctc 300  Q
    ||||||| ||||||||||||| |||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7803 cctaatcgatgaatatattccaaaattgatgaaccctaaat--atctcaaccctaaattgatgaacatgattcctaaattgatgaaccctaatcaatctc 7706  T
Q  301 aactctaaatcg 312  Q
    ||||||||||||    
T  7705 aactctaaatcg 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 9540856 - 9540727
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9540856 atatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccattaataaccacagttatc 9540757  T
Q  108 caaaccgaaccgaaccgaagcataaccata 137  Q
    |||||||||||||||| || ||||||||||    
T  9540756 caaaccgaaccgaaccaaaccataaccata 9540727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 15255697 - 15255568
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||||||  ||  |||||||||||| ||||||||||||||||||||||||||||    
T  15255697 atatcaaaattaactgaaccatttcataaatttttgaactgaaccattattttcttaatagttaattaaccaaaccgaaccattaataaccacagttatc 15255598  T
Q  108 caaaccgaaccgaaccgaagcataaccata 137  Q
    |||||| |||| |||| || ||||||||||    
T  15255597 caaaccaaaccaaaccaaaccataaccata 15255568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 33237415 - 33237545
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaacc-gaaccgaaccattaataaccacagttatccaaa 111  Q
    |||||||||||||||||||||| | ||| ||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33237415 aaaattaactgaaccatttcactaatttttgaactgaatcattattttgataacagttaattaaccagaaccgaactattaataaccacagttatccaaa 33237514  T
Q  112 cc-----gaaccgaaccgaagcataaccata 137  Q
    ||     ||||||||||||| ||||||||||    
T  33237515 ccaaactgaaccgaaccgaaccataaccata 33237545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 4884306 - 4884417
Alignment:
Q  15 aattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccg 114  Q
    ||||||||||||||||| || | ||  ||||| ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| |||||| |||||    
T  4884306 aattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaaccacaattatccgaaccg 4884405  T
Q  115 aaccgaaccgaa 126  Q
    |||| |||||||    
T  4884406 aaccaaaccgaa 4884417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 27115615 - 27115576
Alignment:
Q  84 gaaccattaataaccacagttatccaaaccgaaccgaacc 123  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27115615 gaaccattaataaccacaattatccaaaccgaaccgaacc 27115576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 35259162 - 35259037
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35259162 atatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccattaataaccacagttatc 35259063  T
Q  108 caaaccgaaccgaaccgaagcataac 133  Q
    |||||||||||||||| || ||||||    
T  35259062 caaaccgaaccgaaccaaaccataac 35259037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 34442068 - 34441964
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||| ||||||| | ||| || |||||||||||||||||||| || |||||||||||     ||||||||||||||| |||||||    
T  34442068 atatcaaaattaactgaactatttcactaatttttggactgaaccattattttgataacacttaattaaccg-----aaccattaataaccatagttatc 34441974  T
Q  108 caaaccgaac 117  Q
    ||||||||||    
T  34441973 caaaccgaac 34441964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 23392000 - 23392111
Alignment:
Q  15 aattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccg 114  Q
    ||||||||||||||||| || | ||  ||||| ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| |||||| |||||    
T  23392000 aattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaaccacaattatccgaaccg 23392099  T
Q  115 aaccgaaccgaa 126  Q
    |||| |||||||    
T  23392100 aaccaaaccgaa 23392111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 49705221 - 49705332
Alignment:
Q  15 aattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccg 114  Q
    ||||||||||||||||| || | ||  ||||| ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| |||||| |||||    
T  49705221 aattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaaccacaattatccgaaccg 49705320  T
Q  115 aaccgaaccgaa 126  Q
    |||| |||||||    
T  49705321 aaccaaaccgaa 49705332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 27512147 - 27512058
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataac 97  Q
    |||| |||||||| |||||||||||  |||||   |||||||||||||||||||| |||| || | ||||||||| ||||| ||||||||    
T  27512147 atatcaaaattaattgaaccatttcgaaagttctcgaactgaaccattattttgacagcaattcactaaccgaactgaacctttaataac 27512058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 15666999 - 15667069
Alignment:
Q  48 gaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccgaacc 118  Q
    |||| |||||||||||| || || | ||||||||||||||| ||| |||||||| |||||| |||||||||    
T  15666999 gaactattattttgataacaattcactaaccgaaccgaaccgttagtaaccacaattatccgaaccgaacc 15667069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 48511700 - 48511781
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaat 94  Q
    |||||||||||||||||||||  | ||| ||||| | ||||||||||||||| | ||| | ||||||||| ||||| |||||    
T  48511700 aaaattaactgaaccatttcatcaatttttgaaccgcaccattattttgataacggttcactaaccgaactgaaccgttaat 48511781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 45621743 - 45621643
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| ||||||||| ||||||||| || | ||   |||| ||||||||||||||||| || || | | ||||||| ||||| ||| |||||||| |||||    
T  45621743 atatcaaaattaaccgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactgaccgaactgaaccgttagtaaccacaattatc 45621644  T
Q  108 c 108  Q
    |    
T  45621643 c 45621643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 204 - 351
Target Start/End: Original strand, 32027565 - 32027712
Alignment:
Q  204 aatcaatgaatatattcccaaattgataaaccctaaatcgatctcaaccataaattgatgaacatgattcctaaattgatgaaccctaatcaatctcaac 303  Q
    |||| ||||| | |||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32027565 aatcgatgaaaaaattcccaaattgaggaaccctaaatcgatctcaactctaaattgatgaacatgattcctaaattgatgaaccctaattgatctcaac 32027664  T
Q  304 tctaaatcgttctcaactacccaaatcgacctcaacttttctcatttt 351  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  32027665 tctaaatcgatctcaactacctaaatcgatctcaacttttctcatttt 32027712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 11354464 - 11354355
Alignment:
Q  14 aaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaacc 113  Q
    ||||||||||||||||||||||| ||| |||  || ||||||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||| |    
T  11354464 aaattaactgaaccatttcacaaatttttgagttggaccattattttgacaacagttaattaaccgaacagaaccattaatcaccacggttatccaaatc 11354365  T
Q  114 gaaccgaacc 123  Q
    ||||||||||    
T  11354364 gaaccgaacc 11354355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 32027422 - 32027504
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccat 90  Q
    |||| |||||||||||||| ||||||| | ||| ||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  32027422 atatcaaaattaactgaacaatttcacgaatttttgaactgaaccattataatgataacagttaattaaccgaaccgaaccat 32027504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 31846591 - 31846476
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| ||||||||||||||||||| || | ||   ||||  |||||||||||||||| || || | ||||||||| ||||| ||| |||||||| ||||     
T  31846591 atatcaaaattaactgaaccatttaaccaattctcgaacgaaaccattattttgataacaattcactaaccgaactgaaccgttagtaaccacaattatt 31846492  T
Q  108 caaaccgaaccgaacc 123  Q
    | ||||||||||||||    
T  31846491 cgaaccgaaccgaacc 31846476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 46401254 - 46401173
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaacca 89  Q
    |||| ||||||||||||||||||| || | ||   |||| ||||||||||||||||| || || | || |||||||||||||    
T  46401254 atatcaaaattaactgaaccatttaaccaattcccgaaccgaaccattattttgataacaattcactatccgaaccgaacca 46401173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 42545143 - 42545272
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  42545143 atatcaaaattaactgaaccatttcacagatttttgaactgaaccattattttgataacagttaattaaccgaaccgaaccattaataaccataattatc 42545242  T
Q  108 caaaccgaaccgaaccgaagcataaccata 137  Q
    ||||| ||||||||||||| ||||||||||    
T  42545243 caaactgaaccgaaccgaaccataaccata 42545272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 31506823 - 31506933
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    ||||||||||||||||||| || | ||   |||| ||||||||||||||| | ||||| | ||||||||| ||||||||| |||||||| |||||| |||    
T  31506823 aaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgaaaacagttcactaaccgaactgaaccattagtaaccacaattatccgaac 31506922  T
Q  113 cgaaccgaacc 123  Q
    |||||| ||||    
T  31506923 cgaaccaaacc 31506933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8466563 - 8466453
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    ||||||||||| ||||||| || | ||  ||||  ||||||||||||| ||| ||||| | ||||||||| ||||| ||| |||||||| |||||| |||    
T  8466563 aaaattaactggaccatttaaccaattcttgaatcgaaccattattttaataacagttcactaaccgaactgaaccgttagtaaccacaattatccgaac 8466464  T
Q  113 cgaaccgaacc 123  Q
    | |||||||||    
T  8466463 caaaccgaacc 8466453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 45369346 - 45369217
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  45369346 atatcaaaattaactgaaccatttcacaaatttttgaactgaaccattattttgataacagttaattaaccgaaccgaactattaataatcacagttatc 45369247  T
Q  108 caaaccgaaccgaaccgaagcataaccata 137  Q
    |||||| || ||||||||| ||||||||||    
T  45369246 caaaccaaatcgaaccgaaccataaccata 45369217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 24133978 - 24133868
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||   |||||   ||||||||||| ||| ||||||||||||||||||||||||    
T  24133978 atatcaaaattaactgaaccatttcacaaatttttgaactgaaccattacaatgataatggttaattaaccaaacagaaccattaataaccacagttatc 24133879  T
Q  108 caaaccgaacc 118  Q
    |||||||||||    
T  24133878 caaaccgaacc 24133868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 43178402 - 43178291
Alignment:
Q  15 aattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaaccg 114  Q
    ||||||||||||||||| || | ||  ||||| ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| |||||| |||||    
T  43178402 aattaactgaaccatttaaccaattcttgaaccgaaccattattttgataacaattcattaaccgaactgaaccgttagtaaccacaattatccgaaccg 43178303  T
Q  115 aaccgaaccgaa 126  Q
    |||| |||||||    
T  43178302 aaccaaaccgaa 43178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 17562860 - 17562973
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    ||||||||||||||||||| || | ||   |||| ||||||||||||||||| || || | ||||||||| ||||| ||| |||||||| |||||| |||    
T  17562860 aaaattaactgaaccatttaaccaattctcgaaccgaaccattattttgataacaattcactaaccgaactgaaccgttagtaaccacaattatccgaac 17562959  T
Q  113 cgaaccgaaccgaa 126  Q
    ||||| ||| ||||    
T  17562960 cgaactgaatcgaa 17562973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 8635326 - 8635455
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||| ||||||||||||  ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  8635326 atatcaaaattaactaaaccatttcacagatttttgaactgaaccattattttgataacagttaattaatcgaaccgaaccattaataaccacaattatc 8635425  T
Q  108 caaaccgaaccgaaccgaagcataaccata 137  Q
    ||||||||| ||||||||| ||||||||||    
T  8635426 caaaccgaatcgaaccgaaccataaccata 8635455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 1800234 - 1800349
Alignment:
Q  8 atatgaaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatc 107  Q
    |||| |||||||||||||||||||||  | ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  1800234 atatcaaaattaactgaaccatttcagtaatttttgaactgaaccattattttaataacagttaattaaccgaaccgaaccattaataaccacagttatc 1800333  T
Q  108 caaaccgaaccgaacc 123  Q
    ||||||||||||||||    
T  1800334 caaaccgaaccgaacc 1800349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 29489537 - 29489437
Alignment:
Q  13 aaaattaactgaaccatttcacaagtttatgaactgaaccattattttgatagcagttaattaaccgaaccgaaccattaataaccacagttatccaaac 112  Q
    |||||||| ||||||||||||| | ||   |||| ||||||||||||||||| || || | ||||| ||| ||||||||||||||| || |||||| |||    
T  29489537 aaaattaattgaaccatttcactaattctcgaaccgaaccattattttgataacaattcactaaccaaactgaaccattaataacctcaattatccgaac 29489438  T
Q  113 c 113  Q
    |    
T  29489437 c 29489437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 29396821 - 29396864
Alignment:
Q  75 aaccgaaccgaaccattaataaccacagttatccaaaccgaacc 118  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||    
T  29396821 aaccgaaccgaaccgttagtaaccacaattatccaaaccgaacc 29396864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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