View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_low_1 (Length: 901)
Name: NF1165_low_1
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 21028312 - 21028718
Alignment:
| Q |
11 |
cataggatacatacagcatgcatagatcaacatcagtgtatgatacaaaatcagaaatggctaagggaagaatattttcctactatatttggtttatgct |
110 |
Q |
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| T |
21028312 |
cataggatacatacaacatgcatagatcaacatcagtttatgatgtaaaatcagaaatggctaaaggaagaatattttcctacaatatttggtttatgct |
21028411 |
T |
|
| Q |
111 |
agccttctcatcttgacattaagaggaacctctttgtaggatggaaccttctcagctgctcttcgcaacggtcttccaaaagaatgccttggagcttcat |
210 |
Q |
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| T |
21028412 |
agccttctcatcttgacattaagaggaacctctttgtaggatggaaccttctcagctgcccttcgcaacggtcttccaaaagaatgtcttggtgcttcat |
21028511 |
T |
|
| Q |
211 |
ttcttaaaccagagctttctcctctttcagttttcacagctggagtactcagcttgttattatgtccagattgattgatagcatattgagcatcctctat |
310 |
Q |
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| T |
21028512 |
ttcttaaactagagctttctcctctttcagttttcacagatggagtactcagcttgatattatgtccagattgagtgatagcatattgagcatcctctat |
21028611 |
T |
|
| Q |
311 |
ctcaaacaagttttctagaggttcgtgtacatggacctttgacgccgcagaatgtctcctcaaacttctcctgtgtaccaacaaaaaag-aggaacttat |
409 |
Q |
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| T |
21028612 |
ctcaaacaagttttctagaggttcgtgtacatggacctttgacgccgcagaatgtctcctcaaacttctcc--tgtaccaacaaaaaagcaggaacttat |
21028709 |
T |
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| Q |
410 |
cacattgaa |
418 |
Q |
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|||| |||| |
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| T |
21028710 |
cacagtgaa |
21028718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 611 - 779
Target Start/End: Complemental strand, 21029051 - 21028880
Alignment:
| Q |
611 |
atacttatgtggcacattagattcgtgcatttcatatccactataaggctgttacatc--gcgattcaaacatgttaaataatttctacctggtaagttt |
708 |
Q |
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||||||||||||||||| | |||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||| ||||| |||||||| |
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| T |
21029051 |
atacttatgtggcacataaaattcatgcatttcatatcaactataaggctgctacgtcacgcgattcaaacatgttaaataatttttacctcgtaagttt |
21028952 |
T |
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| Q |
709 |
cttatgcaatttagtcgctagtaatatagcattaaccata-gattcatgtggaaggctacatgttcatttgg |
779 |
Q |
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||||||||||||| || |||||||| || ||| || ||| | |||| |||||||||||||||||||||||| |
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| T |
21028951 |
cttatgcaatttaatccctagtaatgtaacatcgacaataggtttcacgtggaaggctacatgttcatttgg |
21028880 |
T |
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