View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_low_11 (Length: 347)
Name: NF1165_low_11
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_11 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 118397 - 118055
Alignment:
| Q |
1 |
caagaatccgaagatagtaaaaattttcaacaacacacaagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttg |
100 |
Q |
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| T |
118397 |
caagaatccgaagatagtaaaaaatttcaacaacacacaagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttg |
118298 |
T |
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| Q |
101 |
cgaaaggtagaggtccaccaactatgaggatacaaggacagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgccca |
200 |
Q |
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| T |
118297 |
caaaaggtagaggtccaccaactatgaggatacaaggacagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgccca |
118198 |
T |
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| Q |
201 |
actttacatatatgacactgagaatgagatacaaaacagaattagaggattcgggtacatatttttcaaaccttacgtcaattaactctttacataatca |
300 |
Q |
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| T |
118197 |
actttacatatatgacactgagaatgagatacaaaacagaattagaggattcgggtacatatttttcaaaccttacgtcaattaactctttacataatca |
118098 |
T |
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| Q |
301 |
tttcatctataatcatattaattataacttatattcttggaca |
343 |
Q |
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| T |
118097 |
tttcatctataatcatattaattataatttatactgttggaca |
118055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 22072330 - 22072085
Alignment:
| Q |
19 |
aaaaattttcaacaacacacaagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttgcgaaaggtagaggtccac |
118 |
Q |
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| T |
22072330 |
aaaaatttccagcaaaacacaagaatgtataattcaatgttttcatttagttcaccaggcatgaaatttgatgataaggttactaaaggtagaggtccac |
22072231 |
T |
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| Q |
119 |
caactatgaggatacaaggacagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaactttacatatatgacac |
218 |
Q |
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| T |
22072230 |
caaccatgaggatacaaggacagacatgtcaccgaattggtagtctgttgcctccagatggagaactacctaaatatgctcaactttacatatatgacac |
22072131 |
T |
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| Q |
219 |
tgagaatgagatacaaaacagaattagaggattcgggtacatattt |
264 |
Q |
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| T |
22072130 |
agagaatgagatacagaacaaaattaaaggattcgagtatatattt |
22072085 |
T |
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