View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1165_low_13 (Length: 330)
Name: NF1165_low_13
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 37030590 - 37030759
Alignment:
| Q |
30 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030590 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
37030689 |
T |
|
| Q |
130 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030690 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttc |
37030759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 32592694 - 32592578
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
32592694 |
actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
32592595 |
T |
|
| Q |
170 |
aactcagcttcccttag |
186 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32592594 |
aactcagcttcccttag |
32592578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 31527272 - 31527388
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
31527272 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
31527371 |
T |
|
| Q |
170 |
aactcagcttcccttag |
186 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31527372 |
aactcagcttcccttag |
31527388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 51824272 - 51824353
Alignment:
| Q |
52 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
51824272 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta |
51824353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 51824717 - 51824765
Alignment:
| Q |
138 |
tcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttag |
186 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttag |
51824765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 49188058 - 49188235
Alignment:
| Q |
12 |
attatttaatttcagcaaataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188058 |
attatttaatttcagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaag |
49188157 |
T |
|
| Q |
109 |
gaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttag |
186 |
Q |
| |
|
|| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
49188158 |
taaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttag |
49188235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 49191832 - 49191971
Alignment:
| Q |
47 |
ttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcat |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
49191832 |
ttatatatatttgcatgtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat |
49191931 |
T |
|
| Q |
147 |
tcatcctctcaacttcaccttgtaactcagcttcccttag |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49191932 |
tcatcctctcaacttcaccttgtaactcagcatcccttag |
49191971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 49202944 - 49203077
Alignment:
| Q |
51 |
atatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcat |
150 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
49202944 |
atatatttgcat--attaaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcat |
49203041 |
T |
|
| Q |
151 |
cctctcaacttcaccttgtaactcagcttcccttag |
186 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
49203042 |
cctttcaacttcaccttgtaactcagcatcccttag |
49203077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 49208132 - 49208248
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
49208132 |
actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc |
49208231 |
T |
|
| Q |
170 |
aactcagcttcccttag |
186 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49208232 |
aactcagcttcccttag |
49208248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 49212972 - 49213101
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
49212972 |
actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc |
49213071 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttc |
199 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
49213072 |
aactcagcttcccttagagccacagccttc |
49213101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 26756496 - 26756611
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaa---ggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcacct |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||| ||||||| | ||||||||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
26756496 |
actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct |
26756594 |
T |
|
| Q |
167 |
tgtaactcagcttccct |
183 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
26756595 |
tgcaactcagcttccct |
26756611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University