View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_low_15 (Length: 278)
Name: NF1165_low_15
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 37030590 - 37030828
Alignment:
| Q |
30 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030590 |
ataaaaaatgaatcaagttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttc |
37030689 |
T |
|
| Q |
130 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgcc |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030690 |
agtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgcc |
37030789 |
T |
|
| Q |
230 |
ttggtccaagccgctttcttcttagccaactcagtatta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37030790 |
ttggtccaagccgctttcttcttagccaactcagaatta |
37030828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 32592694 - 32592496
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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| T |
32592694 |
actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
32592595 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagtatta |
268 |
Q |
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||||||||||||||||| |||||| || || |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
32592594 |
aactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaatta |
32592496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 31527272 - 31527388
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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| T |
31527272 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
31527371 |
T |
|
| Q |
170 |
aactcagcttcccttag |
186 |
Q |
| |
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||||||||||||||||| |
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|
| T |
31527372 |
aactcagcttcccttag |
31527388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 51824272 - 51824353
Alignment:
| Q |
52 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagta |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||| |
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|
| T |
51824272 |
tatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta |
51824353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 51824717 - 51824842
Alignment:
| Q |
138 |
tcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtcca |
237 |
Q |
| |
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|||| ||||||||| ||||||| |||||||| ||||||||||||||||| ||||| || ||||| |||| |||||| ||||| ||||| ||||| |
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| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
238 |
agccgctttcttcttagccaactcag |
263 |
Q |
| |
|
||||||||||||| | |||||||||| |
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|
| T |
51824817 |
agccgctttcttcatcgccaactcag |
51824842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 49188058 - 49188317
Alignment:
| Q |
12 |
attatttaatttcagcaaataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49188058 |
attatttaatttcagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaag |
49188157 |
T |
|
| Q |
109 |
gaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcg |
208 |
Q |
| |
|
|| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
49188158 |
taaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcg |
49188257 |
T |
|
| Q |
209 |
acttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagtatta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49188258 |
acttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
49188317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 49202944 - 49203159
Alignment:
| Q |
51 |
atatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcat |
150 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
49202944 |
atatatttgcat--attaaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcat |
49203041 |
T |
|
| Q |
151 |
cctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttc |
250 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||| || |||||| |
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|
| T |
49203042 |
cctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttc |
49203141 |
T |
|
| Q |
251 |
ttagccaactcagtatta |
268 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
49203142 |
ttagccaactcagaatta |
49203159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 49191832 - 49192053
Alignment:
| Q |
47 |
ttatatatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcat |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
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|
| T |
49191832 |
ttatatatatttgcatgtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat |
49191931 |
T |
|
| Q |
147 |
tcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgcttt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
49191932 |
tcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgcttt |
49192031 |
T |
|
| Q |
247 |
cttcttagccaactcagtatta |
268 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
49192032 |
cttcttagccaattcagaatta |
49192053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 49212972 - 49213163
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||| |
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|
| T |
49212972 |
actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc |
49213071 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactc |
261 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
49213072 |
aactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactc |
49213163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 49208132 - 49208323
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
169 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
49208132 |
actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc |
49208231 |
T |
|
| Q |
170 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactc |
261 |
Q |
| |
|
||||||||||||||||| ||| || || ||||| | |||||||| ||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
49208232 |
aactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactc |
49208323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 26756496 - 26756689
Alignment:
| Q |
70 |
actaaccttggtttcatattgaacactagctttgctaa---ggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcacct |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||| ||||||| | ||||||||| ||||| |||||||| ||||||||||||||||| |||||| |
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|
| T |
26756496 |
actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct |
26756594 |
T |
|
| Q |
167 |
tgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactc |
261 |
Q |
| |
|
|| |||||||||||||| || |||||| || ||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
26756595 |
tgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactc |
26756689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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