View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1165_low_3 (Length: 662)

Name: NF1165_low_3
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1165_low_3
NF1165_low_3
[»] chr6 (1 HSPs)
chr6 (121-291)||(24138253-24138423)
[»] chr4 (5 HSPs)
chr4 (121-234)||(30064819-30064932)
chr4 (16-117)||(30065034-30065135)
chr4 (480-545)||(30051008-30051072)
chr4 (218-270)||(24410385-24410437)
chr4 (72-103)||(32602037-32602068)
[»] chr5 (1 HSPs)
chr5 (125-288)||(35425679-35425843)
[»] chr1 (2 HSPs)
chr1 (125-288)||(46711088-46711250)
chr1 (232-290)||(16481129-16481187)
[»] chr7 (3 HSPs)
chr7 (222-295)||(31292912-31292985)
chr7 (222-286)||(31199818-31199882)
chr7 (232-286)||(286310-286364)
[»] chr8 (1 HSPs)
chr8 (222-290)||(26103600-26103668)
[»] chr2 (3 HSPs)
chr2 (190-270)||(11765190-11765270)
chr2 (240-290)||(5819036-5819086)
chr2 (80-117)||(33712393-33712430)
[»] scaffold0018 (1 HSPs)
scaffold0018 (232-290)||(38062-38120)
[»] chr3 (1 HSPs)
chr3 (222-264)||(34009449-34009491)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 9e-75; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 121 - 291
Target Start/End: Original strand, 24138253 - 24138423
Alignment:
Q  121 actaatataatacgaggtgagagagacaagctttgggctagtggtgcagtgtatggtgcaggatatacatttgaggggattcaatatagataaaacatag 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  24138253 actaatataatatgaggtgagagagacaagctttgggctagtggtgcagtgcatggtgctggatatacacttgaggggattcaagatagataaaatatag 24138352  T
Q  221 gataataggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgccccc 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24138353 gatagtaggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgccccc 24138423  T

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Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 30064932 - 30064819
Alignment:
Q  121 actaatataatacgaggtgagagagacaagctttgggctagtggtgcagtgtatggtgcaggatatacatttgaggggattcaatatagataaaacatag 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30064932 actaatataatatgaggtgagagagacaagctttgggctagtggtgcagtgtatggtgcaggatatacatttgaggggattcaagatagataaaacatag 30064833  T
Q  221 gataataggtgtaa 234  Q
    ||||||||||||||    
T  30064832 gataataggtgtaa 30064819  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 30065135 - 30065034
Alignment:
Q  16 atcattttttagttaaaatcaattctaaacatttcattgaaagagaaggtatggtagagaaatgttttggttgtccaacaacgtatatctatgctgtata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  30065135 atcattttttagttaaaatcaattctaaacatttcattgaaagagaaggtatggtagagaaatgttttggttgtccaacaacttatatctatactgtata 30065036  T
Q  116 ga 117  Q
    ||    
T  30065035 ga 30065034  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 30051072 - 30051008
Alignment:
Q  480 cctatgagttggaaatctttggattgtatacaagcagtgcagagcagtaaacaaataaccaaaact 545  Q
    ||||||||||||||||||||||||||||||||||||  ||||   || ||||||||||||||||||    
T  30051072 cctatgagttggaaatctttggattgtatacaagcatagcag-taagcaaacaaataaccaaaact 30051008  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 24410437 - 24410385
Alignment:
Q  218 taggataataggtgtaaattaaaaagttgagggggttcagctgcatcccctgg 270  Q
    ||||||||| |||||||||| |||||||||||||||||| ||| |||||||||    
T  24410437 taggataatgggtgtaaatttaaaagttgagggggttcaactgaatcccctgg 24410385  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 32602037 - 32602068
Alignment:
Q  72 gagaaatgttttggttgtccaacaacgtatat 103  Q
    ||||||||||||||||||||||||||||||||    
T  32602037 gagaaatgttttggttgtccaacaacgtatat 32602068  T

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Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 35425679 - 35425843
Alignment:
Q  125 atataatacgaggtgagagagacaagctttgggctagtggtg-cagtgtatggtgcaggatatacatttgaggggattcaatatagataaaacataggat 223  Q
    |||||||| ||||||||||| ||||||||||||  ||||||| ||||| |||||||| | |||| |||||||||||||||| |||||||||| |||||||    
T  35425679 atataatatgaggtgagagaaacaagctttgggtcagtggtgtcagtgcatggtgcaagctatatatttgaggggattcaaaatagataaaagataggat 35425778  T
Q  224 aataggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcc 288  Q
      ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||    
T  35425779 tgtaggtgtaaattaaagagatgagggggttcagctgcatcccctgaatgtatgctggctccgcc 35425843  T

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Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 46711088 - 46711250
Alignment:
Q  125 atataatacgaggtgagagagacaagctttgggctagtggtg-cagtgtatggtgcaggatatacatttgaggggattcaatatagataaaacataggat 223  Q
    |||||||| |||||||||||  |||||| ||||  ||||||| ||||| |||||||| | |||| |||||||||||||||| |||||||||| |||||||    
T  46711088 atataatatgaggtgagaga--caagctctgggtcagtggtgtcagtgcatggtgcaagctatatatttgaggggattcaagatagataaaagataggat 46711185  T
Q  224 aataggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcc 288  Q
      ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  46711186 tgtaggtgtaaattaaagagatgagggggttcagctgcatcccctggatgtatgctggctccgcc 46711250  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 16481129 - 16481187
Alignment:
Q  232 taaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccc 290  Q
    |||||||||  | |||||||||||||||||||||||| |||  | ||||||||||||||    
T  16481129 taaattaaagggatgagggggttcagctgcatcccctagatacaagctggctccgcccc 16481187  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 31292985 - 31292912
Alignment:
Q  222 ataataggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccccgctt 295  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||  | |||||||||||||| ||||    
T  31292985 ataataggagtaaattaaagggttgagggggttcagctgcatcccctggatacaagctggctccgcccctgctt 31292912  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 31199882 - 31199818
Alignment:
Q  222 ataataggtgtaaattaaaaag-ttgagggggttcagctgcatcccctggatgtatgctggctccg 286  Q
    |||||| |||| |||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  31199882 ataatatgtgtgaattaataagattgagggggttcagctgcatcccc-ggatgtaagctggctccg 31199818  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 286310 - 286364
Alignment:
Q  232 taaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccg 286  Q
    |||||||||  | ||||||||||||||||||||||||||||  | ||||||||||    
T  286310 taaattaaaggggtgagggggttcagctgcatcccctggatacaagctggctccg 286364  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 26103668 - 26103600
Alignment:
Q  222 ataataggtgtaaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccc 290  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||  | | ||||||||||||    
T  26103668 ataataggagtaaattaaagggttgagggggttcagctgcatcccctggatacaagttggctccgcccc 26103600  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 11765190 - 11765270
Alignment:
Q  190 tttgaggggattcaatatagataaaacataggataataggtgtaaattaaaaagttgagggggttcagctgcatcccctgg 270  Q
    ||||| ||||||||| ||||| ||| |||||||||||||||||| ||  ||||||||||||||||||  || |||||||||    
T  11765190 tttgaagggattcaagatagaaaaatcataggataataggtgtagatataaaagttgagggggttcacttgaatcccctgg 11765270  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 5819036 - 5819086
Alignment:
Q  240 aaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccc 290  Q
    ||||||||||||||||| |||||| ||||||||| | | ||||||||||||    
T  5819036 aaagttgagggggttcacctgcattccctggatgcaaggtggctccgcccc 5819086  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 33712393 - 33712430
Alignment:
Q  80 ttttggttgtccaacaacgtatatctatgctgtataga 117  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  33712393 ttttggttgtccaacatcgtatatctatactgtataga 33712430  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 38120 - 38062
Alignment:
Q  232 taaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccc 290  Q
    |||||||||  | ||||||||||||||||||||||||||||  | ||||||||| ||||    
T  38120 taaattaaaggggtgagggggttcagctgcatcccctggatacaagctggctccacccc 38062  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 34009449 - 34009491
Alignment:
Q  222 ataataggtgtaaattaaaaagttgagggggttcagctgcatc 264  Q
    |||||||| ||||||||||  ||||||||||||||||||||||    
T  34009449 ataataggagtaaattaaagggttgagggggttcagctgcatc 34009491  T

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