View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1165_low_5 (Length: 578)

Name: NF1165_low_5
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1165_low_5
NF1165_low_5
[»] chr3 (29 HSPs)
chr3 (13-485)||(22358602-22359074)
chr3 (19-485)||(22636103-22636569)
chr3 (19-484)||(22632466-22632934)
chr3 (19-462)||(22368532-22368972)
chr3 (84-484)||(22631070-22631467)
chr3 (89-484)||(22468549-22468941)
chr3 (104-477)||(22437242-22437624)
chr3 (64-367)||(22443454-22443769)
chr3 (252-484)||(22431752-22431978)
chr3 (19-194)||(22354262-22354431)
chr3 (13-100)||(22437604-22437691)
chr3 (99-203)||(22638017-22638121)
chr3 (13-71)||(22445499-22445557)
chr3 (398-462)||(22459100-22459164)
chr3 (398-462)||(22482081-22482145)
chr3 (272-360)||(22207667-22207755)
chr3 (143-321)||(22459220-22459407)
chr3 (143-321)||(22482201-22482388)
chr3 (269-313)||(3221871-3221915)
chr3 (273-324)||(22370908-22370959)
chr3 (269-315)||(2748680-2748726)
chr3 (269-315)||(2768751-2768797)
chr3 (269-315)||(2839010-2839056)
chr3 (269-315)||(2856220-2856266)
chr3 (269-315)||(3200635-3200681)
chr3 (269-315)||(3357767-3357813)
chr3 (281-319)||(22010502-22010540)
chr3 (281-319)||(22186668-22186706)
chr3 (288-321)||(22657830-22657863)
[»] chr4 (1 HSPs)
chr4 (140-170)||(29611145-29611175)
[»] chr1 (2 HSPs)
chr1 (288-321)||(34975186-34975219)
chr1 (286-314)||(4255365-4255393)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 485
Target Start/End: Complemental strand, 22359074 - 22358602
Alignment:
Q  13 aatatcagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcat 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22359074 aatattagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcat 22358975  T
Q  113 ttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22358974 ttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaagaatagaagtcttcatca 22358875  T
Q  213 acgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358874 acgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattga 22358775  T
Q  313 tgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358774 tgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagct 22358675  T
Q  413 tacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358674 tacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttct 22358602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 22636569 - 22636103
Alignment:
Q  19 agcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgctt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636569 agcaaattaaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgctt 22636470  T
Q  119 ccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||| ||| |||||||||||||||||||    
T  22636469 ccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatg 22636370  T
Q  219 cggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgatta 318  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22636369 cggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgatta 22636270  T
Q  319 tatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaag 418  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636269 tatctttcttgaggaacaacatgctcctgatcctggttgtgctgctgttgctacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaag 22636170  T
Q  419 attcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636169 attcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttct 22636103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 22632934 - 22632466
Alignment:
Q  19 agcaaattgaaatcaaatatacaacaaaatgtgtgac------tgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcat 112  Q
    |||||||| |||||||| ||||||||||||||||||       ||| | | |||| || |||||||| |||||||||||||||||||||||||||||||     
T  22632934 agcaaattaaaatcaaagatacaacaaaatgtgtgataaaatgtgtgacgctgcattttcctgcgcttgtgatcatttgcttccactagcccgtgatcac 22632835  T
Q  113 ttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatca 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||| |||||||||||||    
T  22632834 ttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgaaagatgaacttgaaagaattgaagtcttcatca 22632735  T
Q  213 acgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattga 312  Q
    |||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22632734 acgatgtggatagaacagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattga 22632635  T
Q  313 tgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagct 412  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||| |||| | ||   |||  || ||||||| |  | | ||||||||||| |||    
T  22632634 tgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctactggagctattgacttggtgaaaactaagattcttcgtctccaaattgct 22632535  T
Q  413 tacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttc 484  Q
     ||||||||||||||||||||||| |||| || |||||||| || |||||   |||||||||||||||||||    
T  22632534 gacaagattcagaacatcaaatccagaattagagaaataaaagaaacaag---tgaaaaagatcatggcttc 22632466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 22368972 - 22368532
Alignment:
Q  19 agcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgctt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  22368972 agcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagctgcacttgcctgcgctcgtgataacttgcttccactagcccgtgatcatttgctt 22368873  T
Q  119 ccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatg 218  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||  || |||| ||||||||||||||    
T  22368872 ccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagcattgaagacttcatcaacgatg 22368773  T
Q  219 cggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgatta 318  Q
    |||||| |||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22368772 cggatagaagatctgatgatgtagaagacaagaaaatcaaagacatgacgaagcagctgatagaaacatcttttcacatagaagatgtcattgatgatta 22368673  T
Q  319 tatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaag 418  Q
    |||||| ||||||||||| ||  || |||| |||||||||||||||| ||||    |||   |||||||||      | ||||||||||| ||||| |||    
T  22368672 tatcttccttgaggaacatcaatcttctgaacctggatgtgctgctgctgtt---gacttgctcaaaactacaaaactacgtctccaaattgcttataag 22368576  T
Q  419 attcagaacatcaaatcccgaataagtgaaataaatgatacaag 462  Q
    |||||||||||||| |||| ||| || |||||||| || |||||    
T  22368575 attcagaacatcaattcccaaattagggaaataaaagaaacaag 22368532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 84 - 484
Target Start/End: Complemental strand, 22631467 - 22631070
Alignment:
Q  84 atcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaaga 183  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22631467 atcatttgcttccactagcccgtgatcacttgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaaga 22631368  T
Q  184 ggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaa 283  Q
     ||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22631367 tgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaa 22631268  T
Q  284 gcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtca 383  Q
    |||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |      |||  || |    
T  22631267 gcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacatgctcctgatcctggatgtgctgctggagccgttgacttggtga 22631168  T
Q  384 aaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggctt 483  Q
    |||||| |  | | ||||||||||| |||||||||||||||||||||||||||| ||| || |||||||| || |||||   ||||||||||||||||||    
T  22631167 aaactaagattcttcgtctccaaattgcttacaagattcagaacatcaaatcccaaattagagaaataaaagaaacaag---tgaaaaagatcatggctt 22631071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 89 - 484
Target Start/End: Complemental strand, 22468941 - 22468549
Alignment:
Q  89 ttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaac 188  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||  ||| |||||||||| ||||||| |||| ||||    
T  22468941 ttgcttccactagcccgtgatcatttgcttccgctcttcaaggaagcattcaacatgattaggggtaacccgaaagaaattgtagaattgaaagatgaac 22468842  T
Q  189 tagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatc 288  Q
    ||||||  || |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22468841 tagaaagcattgaagacttcatcaacgatgcggatagaagagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatc 22468742  T
Q  289 ttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaact 388  Q
    || |||||||||||||||  |||||||||||||||| ||||||||||||||  || |||||||||||||||||||||||| |    |||  || ||||||    
T  22468741 ttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaatcttctgatcctggatgtgctgctggtgctgttgacttggtgaaaact 22468642  T
Q  389 atggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatcatggcttc 484  Q
    | |    | |||||||||||| |||||||||||||||||||||| |||||||| || |||||||| || |||||   || ||||||||||||||||    
T  22468641 aagatccttcgtctccaaataacttacaagattcagaacatcaagtcccgaatcagagaaataaaagaaacaag---tgcaaaagatcatggcttc 22468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 104 - 477
Target Start/End: Complemental strand, 22437624 - 22437242
Alignment:
Q  104 cgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaag 203  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||| |  || ||||    
T  22437624 cgtgatcatttgcttccactattaaaggtagcattcaacatgattaggggtgtcccaaaagaaattgcagatttgaaagatgaactagagagcatggaag 22437525  T
Q  204 tcttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaa------------tcaaagacatgatcaagcagctgatagaagcatcttt 291  Q
     |||||||| | |||  |||| |   |||||||| | ||||||||| ||||            ||||||  | ||| ||| |||| ||||||||||||||    
T  22437524 acttcatcagcaatgaagatagattcgctgatgaagaagaagacaaaaaaagaagtgatgcaatcaaagcaaggatgaagaagctaatagaagcatcttt 22437425  T
Q  292 tcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctggtgttacaaactgtgtcaaaactatg 391  Q
    | ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  22437424 tgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctggtgccacaaactgtgtcaaaactatg 22437325  T
Q  392 gctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaagaactgaaaaagatca 477  Q
    |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||   ||||||||||||    
T  22437324 gctcaccgtctccaaatagcctacacgattcagaacatcaaatcccgaatgagtgaaataaaagatacaag---tgaaaaagatca 22437242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 64 - 367
Target Start/End: Complemental strand, 22443769 - 22443454
Alignment:
Q  64 tgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaa 163  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  22443769 tgcactttcctgcgctcgtgataacttgcttccactagcccgtgatcatttgcttccaatcttgaaggaagcattcaacatgattaagggtgtcccaaaa 22443670  T
Q  164 gaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtagaagac------------aaga 251  Q
    ||||||| ||||||| |||| |||||||||| ||| |||   ||||||||| |||| |||| || |||||||| || |||||||             |||    
T  22443669 gaaattgcagaattgaaagatgaactagaaagaattgaaaaattcatcaacaatgcagatagaatggctgatgctgaagaagacgtggaaacaagtcaga 22443570  T
Q  252 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcc 351  Q
    |||||||||  |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||  || ||||||     
T  22443569 aaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctgatct 22443470  T
Q  352 tggatgtgctgctggt 367  Q
    ||||||||||||||||    
T  22443469 tggatgtgctgctggt 22443454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 252 - 484
Target Start/End: Complemental strand, 22431978 - 22431752
Alignment:
Q  252 aaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcc 351  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||    
T  22431978 aaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcc 22431879  T
Q  352 tggatgtgctgctggtgttacaaactgtgtcaaaactatggctttccgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaata 451  Q
    |||||| ||||||||| ||    |||   ||||||||| |  | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22431878 tggatgcgctgctggtctt---gacttgatcaaaactaagattcttcgtctccaaatagcttacaagattcagaacatcaaatcccgaattagtgaaata 22431782  T
Q  452 aatgatacaagaactgaaaaagatcatggcttc 484  Q
    || ||||||||   |||||||||||||||||||    
T  22431781 aaagatacaag---tgaaaaagatcatggcttc 22431752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 22354431 - 22354262
Alignment:
Q  19 agcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccactagcccgtgatcatttgctt 118  Q
    |||||||| |||||||| |||||||||||||||||||  |      |||||| ||||||| |||||||| |||||||| ||||||| |||||||||||||    
T  22354431 agcaaattcaaatcaaagatacaacaaaatgtgtgacact------gcactttcctgcgcccgtgatcacttgcttccgctagcccatgatcatttgctt 22354338  T
Q  119 ccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaa 194  Q
    ||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| ||||    
T  22354337 ccactcttgaaggaagcattcaatatgattagggttgtcccaaaagaaattgcagaattgaaagaggaacttgaaa 22354262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 22437691 - 22437604
Alignment:
Q  13 aatatcagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttgcctgcgctcgtgatcatttgcttccacta 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22437691 aatattagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatttgcttccacta 22437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 22638121 - 22638017
Alignment:
Q  99 tagcccgtgatcatttgcttccattcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataat 198  Q
    |||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||    
T  22638121 tagctcgtgataaattgcttccactcttgaaggaagcattcaacatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaat 22638022  T
Q  199 agaag 203  Q
     ||||    
T  22638021 tgaag 22638017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 22445557 - 22445499
Alignment:
Q  13 aatatcagcaaattgaaatcaaatatacaacaaaatgtgtgactgtaaagatgcacttg 71  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  22445557 aatattagcaaattgaaatcaaatatacaacaaaatgtgtgaccgtaaagctgcacttg 22445499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 22459164 - 22459100
Alignment:
Q  398 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 462  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||| |||||||| |||||||||||    
T  22459164 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaag 22459100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 22482145 - 22482081
Alignment:
Q  398 cgtctccaaatagcttacaagattcagaacatcaaatcccgaataagtgaaataaatgatacaag 462  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||| |||||||| |||||||||||    
T  22482145 cgtcgccaaatagcatacaagattcagaaaatcaaatcccaaattagtgaaatgaatgatacaag 22482081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 22207667 - 22207755
Alignment:
Q  272 cagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgc 360  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| |||||  |   ||||| ||||||  ||| |||||||||||||||    
T  22207667 cagctgagagaagcatcttttcagatacaagatgtcattgatgaatatatgatatgtgagggacaacagcctcatgatcctggatgtgc 22207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 22459407 - 22459220
Alignment:
Q  143 atgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtag 242  Q
    |||||||||||||||||||||||||||  |||  || |||| ||||| ||||  || |||  |||||||||| |||| |||| ||  ||||||| || ||    
T  22459407 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22459308  T
Q  243 aagacaa-------gaa--aatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 321  Q
    | |||||       |||  ||||||||  | |||||||||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22459307 atgacaatgcaagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22459220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 22482388 - 22482201
Alignment:
Q  143 atgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaataatagaagtcttcatcaacgatgcggataaaagggctgatgatgtag 242  Q
    |||||||||||||||||||||||||||  |||  || |||| ||||| ||||  || |||  |||||||||| |||| |||| ||  ||||||| || ||    
T  22482388 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22482289  T
Q  243 aagacaa-------gaa--aatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatat 321  Q
    | |||||       |||  ||||||||  | |||||||||||| |||||||||||||||  |||  |||||||||||||||| |||||    
T  22482288 atgacaatgcaagtgaaggaatcaaagcaaggatcaagcagctcatagaagcatcttttggcattcaagatgtcattgatgaatatat 22482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 3221915 - 3221871
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgat 313  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||    
T  3221915 aagcagctaagagaagcatcttttcacatagaagatgtgattgat 3221871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 22370959 - 22370908
Alignment:
Q  273 agctgatagaagcatcttttcacatagaagatgtcattgatgattatatctt 324  Q
    |||||| ||||  ||||||| |||||||||||||||||||||| ||||||||    
T  22370959 agctgaaagaaatatctttttacatagaagatgtcattgatgaatatatctt 22370908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 2748680 - 2748726
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2748680 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2748726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 2768751 - 2768797
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2768751 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2768797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 2839056 - 2839010
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2839056 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2839010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 2856266 - 2856220
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  2856266 aagcagctgagagaagcatcatttcgcattgaagatgtcattgatga 2856220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 3200635 - 3200681
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||| | |||||||||||||| |||||||||||| ||||||||    
T  3200635 aagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3200681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 3357813 - 3357767
Alignment:
Q  269 aagcagctgatagaagcatcttttcacatagaagatgtcattgatga 315  Q
    |||||||| | |||||||||||||| |||||||||||| ||||||||    
T  3357813 aagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3357767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 22010502 - 22010540
Alignment:
Q  281 gaagcatcttttcacatagaagatgtcattgatgattat 319  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22010502 gaagcagcttttcacatagaagatatcattgatgattat 22010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 22186668 - 22186706
Alignment:
Q  281 gaagcatcttttcacatagaagatgtcattgatgattat 319  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22186668 gaagcagcttttcacatagaagatatcattgatgattat 22186706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 22657863 - 22657830
Alignment:
Q  288 cttttcacatagaagatgtcattgatgattatat 321  Q
    |||||| |||||||||||||||||||||||||||    
T  22657863 cttttcgcatagaagatgtcattgatgattatat 22657830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 29611175 - 29611145
Alignment:
Q  140 aacatgattaggggtgtcccaaaagaaattg 170  Q
    |||||||||||||||||||||||||||||||    
T  29611175 aacatgattaggggtgtcccaaaagaaattg 29611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 34975186 - 34975219
Alignment:
Q  288 cttttcacatagaagatgtcattgatgattatat 321  Q
    |||||| |||||||||||||||||||||||||||    
T  34975186 cttttctcatagaagatgtcattgatgattatat 34975219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 4255365 - 4255393
Alignment:
Q  286 atcttttcacatagaagatgtcattgatg 314  Q
    |||||||||||||||||||||||||||||    
T  4255365 atcttttcacatagaagatgtcattgatg 4255393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University