View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_low_6 (Length: 518)
Name: NF1165_low_6
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 36 - 490
Target Start/End: Complemental strand, 43584315 - 43583859
Alignment:
| Q |
36 |
aatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaa |
135 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43584315 |
aatcctgaatgctccaaacacatacttcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaa |
43584216 |
T |
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| Q |
136 |
tgacaaacaaatttgtcaactcaatccacttcacattgcacatgcatagtgtttgcattatgaacacacaataagaggtctacttgtagccatacattat |
235 |
Q |
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| T |
43584215 |
tgacaaacaaatttgtcaactcaatccacttcacattgcacatgcatagtgtttgcattatgaacacacaataagaggtctgcttgtagccatacattat |
43584116 |
T |
|
| Q |
236 |
tagtttgcatgtctactaccttatttagtctctaaagccactttgattatacaaaaagattatagttcgaccttgctgccttctaacaannnnnnnncca |
335 |
Q |
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| T |
43584115 |
tagtttgcatgtctactaccttatttagtctctaaagccactttgattatacaaaaagattatagttcgaccttgctgccttctaacaaatttttttcca |
43584016 |
T |
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| Q |
336 |
ctaacaaattaatcagtgacatttggt--nnnnnnngaagaaagatatatatctcctattgtagaaaagagtagaaaacaaataaattttattaatgaca |
433 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
43584015 |
ctaacaaattaatcagtgacatttggtaaaaaaaagaaagaaagatatatatctcctattgtagaaaagagaagcaaacaaataaattttattaatgaca |
43583916 |
T |
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| Q |
434 |
cacaatagaccttcaatcacatagataaaagagtccaataattaaggctacatattt |
490 |
Q |
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| T |
43583915 |
cacaatagaccttcaatcacatagataaaagagtccaataattaaggctacatattt |
43583859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 43584289 - 43584190
Alignment:
| Q |
1 |
tcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaagtttgtcaattcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
43584289 |
tcatcataaacaatgacaaacaagtttgtcaattcaatcttgactgctccaaacacaggcttcatcataaacaatgacaaacaaatttgtcaactcaatc |
43584190 |
T |
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