View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1165_low_7 (Length: 497)
Name: NF1165_low_7
Description: NF1165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1165_low_7 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 134 - 489
Target Start/End: Complemental strand, 118772 - 118417
Alignment:
| Q |
134 |
gaccatgattctgatttacatactgaatctgattctgaagatgatatgtttcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttac |
233 |
Q |
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| T |
118772 |
gaccatgattctgatttacatactgaatctgattctgaagatgatatgttgcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttac |
118673 |
T |
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| Q |
234 |
aaggtagtataataatttatattttaaatacattcattatttcagttaatatatggcatttatacttatgtagaactattattgtagattattttgatat |
333 |
Q |
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| T |
118672 |
aaggtaggataataatttatattttaaatacattcattatttcagtaaatatatggcatttatacttatgtagaactattattgtagattattttgacat |
118573 |
T |
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| Q |
334 |
cggtgatccagattgcatttgtcaacaatgtggagcagaaatgtggtatctagaaaggaaacataaatctaagtctacagaaacacccttatttcaactg |
433 |
Q |
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| T |
118572 |
cggtgatccagattgcatttgtcaacaatgtggagcagaaatgtggtatctagaaaggaaacataaatctaagtctacagaaacacccttatttcaactg |
118473 |
T |
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| Q |
434 |
tgttgcggagatggaaaggtccaactacctctcctaagacaacctcctcctatgct |
489 |
Q |
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| T |
118472 |
tgttgcggagatggaaaggtccaactacctctcctaagacaacctcctcctgtgct |
118417 |
T |
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Back To:
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Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 314 - 481
Target Start/End: Complemental strand, 22072543 - 22072376
Alignment:
| Q |
314 |
attgtagattattttgatatcggtgatccagattgcatttgtcaacaatgtggagcagaaatgtggtatctagaaaggaaacataaatctaagtctacag |
413 |
Q |
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| T |
22072543 |
attgtagattattttgatatcggagatcctgattgcatttgtcaacaatgtggagcagaaatgtggtatttagaaaggaaacataaatctaagtttacaa |
22072444 |
T |
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| Q |
414 |
aaacacccttatttcaactgtgttgcggagatggaaaggtccaactacctctcctaagacaacctcct |
481 |
Q |
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| T |
22072443 |
caacacctttatttcaactgtgttgcgggaatggaaaagtccaacttcctcttctaagacaacctcct |
22072376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 22073097 - 22073015
Alignment:
| Q |
164 |
gattctgaagatgatatgtttcaacaaaatacaaatgccgcaagcataccaataggagaacctttgttacaaggtagtataat |
246 |
Q |
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| T |
22073097 |
gattctgaagatgatatagctgaacaaaatacaaatgccacaaacatacaagtaggagaacctgcattacaaggtaatataat |
22073015 |
T |
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