View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_high_11 (Length: 442)

Name: NF11660_high_11
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_high_11
NF11660_high_11
[»] chr1 (8 HSPs)
chr1 (203-428)||(47666391-47666616)
chr1 (18-205)||(47668029-47668217)
chr1 (297-402)||(28858624-28858729)
chr1 (169-242)||(42471275-42471348)
chr1 (376-422)||(33827732-33827778)
chr1 (376-422)||(33840187-33840233)
chr1 (376-406)||(11013007-11013037)
chr1 (376-406)||(52563733-52563763)
[»] chr4 (3 HSPs)
chr4 (298-409)||(52339199-52339310)
chr4 (302-416)||(43491115-43491229)
chr4 (170-235)||(26619935-26620000)
[»] chr3 (7 HSPs)
chr3 (300-401)||(20330457-20330558)
chr3 (298-408)||(26888322-26888432)
chr3 (320-421)||(20281883-20281983)
chr3 (320-421)||(20309497-20309598)
chr3 (320-421)||(20331678-20331779)
chr3 (296-394)||(26890847-26890945)
chr3 (308-401)||(20308289-20308383)
[»] chr7 (2 HSPs)
chr7 (296-415)||(27878602-27878721)
chr7 (297-341)||(32868354-32868398)
[»] chr8 (2 HSPs)
chr8 (169-237)||(39284622-39284690)
chr8 (293-369)||(28339312-28339388)
[»] chr5 (2 HSPs)
chr5 (184-235)||(3522461-3522512)
chr5 (169-236)||(26449124-26449191)
[»] chr2 (4 HSPs)
chr2 (169-212)||(40627051-40627094)
chr2 (376-406)||(7981129-7981159)
chr2 (376-406)||(43237708-43237738)
chr2 (310-406)||(34404967-34405063)
[»] chr6 (1 HSPs)
chr6 (296-396)||(2243593-2243693)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 203 - 428
Target Start/End: Complemental strand, 47666616 - 47666391
Alignment:
Q  203 actatcatatccaatctttatctattttctaatcccatcaggttttctatcatatcttgtactccaaacgggccctaagtgtttaatcatagacttattt 302  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47666616 actatcatatcctatctttatctattttctaatcccatcaggttttctatcatatcttgtactccaaacgggccctaagtgtttaatcataggcttattt 47666517  T
Q  303 atacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagttttg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47666516 atacgtttagtccctgcaaataggggtcacttgagttttagtctctgaattttctaatcctttcaaatttgcgctgaaaatattaatcacttgagttttg 47666417  T
Q  403 gtccctcaacccataatctctctgtg 428  Q
    ||| ||||||||||||||||||||||    
T  47666416 gtctctcaacccataatctctctgtg 47666391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 47668217 - 47668029
Alignment:
Q  18 acaagatcatgatattggctattgtgtaacttgtatatatagcattctcaattaaaagctctaaaatgggtaacgattcgcataacaacatcattagnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |       
T  47668217 acaagatcatgatattggctattgtgtaacttgtatatatagcattctcaattaaaagctctaaaatgggtaacgattcgcataacaacataatttgaaa 47668118  T
Q  118 nnnngcagtgcctccaagtgtcgttttttatcatgt-agtaacaactatgctccaaacgcatgaaatgataactgtctatcatgttact 205  Q
        |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47668117 caaagcagtgcctccaagtgtcgttttttatcatgtcagtaacaagtatgctccaaacgcatgaaatgataactgtctatcatgttact 47668029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 28858729 - 28858624
Alignment:
Q  297 ttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttga 396  Q
    ||||||||| ||| |||||||| |||||||||| | |||||||||  ||  | | ||| ||||||||||||||||||   ||||||||||||||||||||    
T  28858729 ttatttatatgttaagtccctgtaaataggggttatttgagttttgttccattaatttgctaatcctttcaaatttgtcatgcaaatattaatcacttga 28858630  T
Q  397 gttttg 402  Q
     |||||    
T  28858629 cttttg 28858624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 42471348 - 42471275
Alignment:
Q  169 ccaaacgcatgaaatgataactgtctatcatgttactatcatatccaatctttatctattttctaatcccatca 242  Q
    |||||| ||||| ||||||| |||||||||| | | |||||||||  |||||||||||||||||||||| ||||    
T  42471348 ccaaacacatgatatgataaatgtctatcatatcattatcatatcatatctttatctattttctaatcctatca 42471275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 33827778 - 33827732
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtccctcaacccataatctc 422  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  33827778 ctgcaaatattaatcacttgagttttggtccctaaactcatagtctc 33827732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 33840187 - 33840233
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtccctcaacccataatctc 422  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  33840187 ctgcaaatattaatcacttgagttttggtccctaaactcatagtctc 33840233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 11013037 - 11013007
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtcc 406  Q
    |||||||||||||||||||||||||||||||    
T  11013037 ctgcaaatattaatcacttgagttttggtcc 11013007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 52563733 - 52563763
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtcc 406  Q
    |||||||||||||||||||||||||||||||    
T  52563733 ctgcaaatattaatcacttgagttttggtcc 52563763  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 52339199 - 52339310
Alignment:
Q  298 tatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgag 397  Q
    ||||||||| |||||||||||||||||||||||| | ||||||| ||| |||| ||| |||||||||||||  || | |||||||||||||||||||||     
T  52339199 tatttatacatttagtccctgcaaataggggtcattagagttttggtccctgaatttactaatcctttcaatctttccctgcaaatattaatcacttgac 52339298  T
Q  398 ttttggtccctc 409  Q
    ||||||||||||    
T  52339299 ttttggtccctc 52339310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 43491229 - 43491115
Alignment:
Q  302 tatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagtttt 401  Q
    |||| ||||||||| | ||||||||||||||||||||||| ||   ||| |||  |||||||||||| ||||   |||||| |||||||||| |||||||    
T  43491229 tatatgtttagtccttacaaataggggtcacttgagttttggttcatgaatttgttaatcctttcaattttgttttgcaaagattaatcactcgagtttt 43491130  T
Q  402 ggtccctcaacccat 416  Q
     |||||  |||||||    
T  43491129 agtccccaaacccat 43491115  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 26620000 - 26619935
Alignment:
Q  170 caaacgcatgaaatgataactgtctatcatgttactatcatatccaatctttatctattttctaat 235  Q
    |||| |||||||| ||||| |||||||||||||| |||||||||| ||  ||||  ||||||||||    
T  26620000 caaatgcatgaaaggataaatgtctatcatgttattatcatatcctattcttattcattttctaat 26619935  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 20330457 - 20330558
Alignment:
Q  300 tttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagtt 399  Q
    ||||||| |||||||||| |||||||||||   |||| |||| |||||||| ||| |||||||||| | |||||| ||||||||||||||||||| ||||    
T  20330457 tttatacatttagtccctacaaataggggtagtttgaattttggtctctgactttactaatccttttatatttgccctgcaaatattaatcacttaagtt 20330556  T
Q  400 tt 401  Q
    ||    
T  20330557 tt 20330558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 26888322 - 26888432
Alignment:
Q  298 tatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgag 397  Q
    ||||||||| |||||||||| | |||||  || ||||||||||| ||| |||| ||| | ||||||||||||| ||   | ||||||||||||||||| |    
T  26888322 tatttatacatttagtccctcctaatagttgttacttgagttttggtccctgaatttgccaatcctttcaaatctgacgtccaaatattaatcacttgtg 26888421  T
Q  398 ttttggtccct 408  Q
    |||||||||||    
T  26888422 ttttggtccct 26888432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 20281983 - 20281883
Alignment:
Q  320 aaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagttttggtccctcaacccataat 419  Q
    |||||||||||| |||| |||  |||| ||| ||| | |||| ||||||| |||| |||||||||| |||||||||||||||||||||| | ||||||||    
T  20281983 aaataggggtcatttgaatttcggtctttgaatttaccaatc-tttcaaacttgctctgcaaatatcaatcacttgagttttggtccctgagcccataat 20281885  T
Q  420 ct 421  Q
    ||    
T  20281884 ct 20281883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 20309598 - 20309497
Alignment:
Q  320 aaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagttttggtccctcaacccataat 419  Q
    ||||| |||||| |||| |||| ||| |||| ||| | |||||||||||| ||||  ||||| |||||||||||||||||||||||||| | |||| |||    
T  20309598 aaataagggtcatttgaattttggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggtccctgagcccacaat 20309499  T
Q  420 ct 421  Q
    ||    
T  20309498 ct 20309497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 421
Target Start/End: Complemental strand, 20331779 - 20331678
Alignment:
Q  320 aaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagttttggtccctcaacccataat 419  Q
    |||||||||||| |||| || | ||| |||| ||| | |||||||||||| ||||  ||||| ||||||||||||||||||||||| || | ||||||||    
T  20331779 aaataggggtcatttgaattctggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggtctctaagcccataat 20331680  T
Q  420 ct 421  Q
    ||    
T  20331679 ct 20331678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 26890945 - 26890847
Alignment:
Q  296 cttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcactt 394  Q
    ||||||||||| | |||||||| |||| | ||||||||| |||| | |||||||| ||| ||||| ||||||||||||   ||||||||| ||||||||    
T  26890945 cttatttatacatctagtccctccaaaaaagggtcacttaagttatggtctctgaatttgctaattctttcaaatttgacatgcaaatatgaatcactt 26890847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 20308289 - 20308383
Alignment:
Q  308 tttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaa-atttgcgctgcaaatattaatcacttgagtttt 401  Q
    ||||||||||  |||||||||| | |||| |||| ||| |||| |||  |||||||||  | |||||| ||||||||||||||||||| ||||||    
T  20308289 tttagtccctataaataggggtaatttgaattttggtccctgaatttaataatcctttttatatttgccctgcaaatattaatcacttaagtttt 20308383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 27878721 - 27878602
Alignment:
Q  296 cttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttg 395  Q
    |||||||||| | |||||||||| ||||||| |||||||||||||| |||  ||| ||| |||||||| | || |||||  |||||||||||||||||||    
T  27878721 cttatttatatgcttagtccctgtaaataggtgtcacttgagttttcgtccgtgaatttgctaatcctctaaattttgccatgcaaatattaatcacttg 27878622  T
Q  396 agttttggtccctcaaccca 415  Q
    | ||||| ||| | ||||||    
T  27878621 acttttgatccttgaaccca 27878602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 32868398 - 32868354
Alignment:
Q  297 ttatttatacgtttagtccctgcaaataggggtcacttgagtttt 341  Q
    |||| |||||||||||||  | |||||||||||||||||||||||    
T  32868398 ttatctatacgtttagtctttacaaataggggtcacttgagtttt 32868354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 39284622 - 39284690
Alignment:
Q  169 ccaaacgcatgaaatgataactgtctatcatgttactatcatatccaatctttatctattttctaatcc 237  Q
    |||||| ||||| ||||||  |||||||||||||||| || ||||| ||||||||| | ||||||||||    
T  39284622 ccaaacacatgatatgatagatgtctatcatgttactttcttatcctatctttatccaatttctaatcc 39284690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 28339388 - 28339312
Alignment:
Q  293 agacttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaa 369  Q
    |||| ||| ||||| |||||||||||||||||||||||| ||||   || ||| |||| ||| |||||| |||||||    
T  28339388 agacatatatatacctttagtccctgcaaataggggtcatttgaaacttggtccctgaatttactaatcatttcaaa 28339312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 3522512 - 3522461
Alignment:
Q  184 gataactgtctatcatgttactatcatatccaatctttatctattttctaat 235  Q
    ||||| ||| |||||||||||||||||||   ||||||||||||||||||||    
T  3522512 gataaatgtttatcatgttactatcatattatatctttatctattttctaat 3522461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 26449124 - 26449191
Alignment:
Q  169 ccaaacgcatgaaatgataactgtctatcatgttactatcatatccaatctttatctattttctaatc 236  Q
    ||||| |||||| | ||||| |||||||||||| |||||||||||  || |||||| |||||||||||    
T  26449124 ccaaaagcatgataggataagtgtctatcatgtcactatcatatcatatttttatccattttctaatc 26449191  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 40627051 - 40627094
Alignment:
Q  169 ccaaacgcatgaaatgataactgtctatcatgttactatcatat 212  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||    
T  40627051 ccaaacacatgaaatgataagtgtctatcttgttactatcatat 40627094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 7981129 - 7981159
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtcc 406  Q
    |||||||||||||||||||||||||||||||    
T  7981129 ctgcaaatattaatcacttgagttttggtcc 7981159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 43237738 - 43237708
Alignment:
Q  376 ctgcaaatattaatcacttgagttttggtcc 406  Q
    |||||||||||||||||||||||||||||||    
T  43237738 ctgcaaatattaatcacttgagttttggtcc 43237708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 406
Target Start/End: Complemental strand, 34405063 - 34404967
Alignment:
Q  310 tagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttgagttttggtcc 406  Q
    |||||||||||||||||| ||| |||| ||||||||  ||   || ||||||||  |||| || | ||||||||  |||||| ||||||||||||||    
T  34405063 tagtccctgcaaatagggctcaattgaattttagtccatgtacttactaatcctcccaaaatttccctgcaaattctaatcatttgagttttggtcc 34404967  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 2243693 - 2243593
Alignment:
Q  296 cttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgatttttctaatcctttcaaatttgcgctgcaaatattaatcacttg 395  Q
    |||||||||| ||||| ||||| |||||||||| || || | ||||  ||  ||| ||| || ||||||  || ||||| ||||||||||||||||||||    
T  2243693 cttatttataagtttaatcccttcaaataggggacatttaaattttgatccatgaatttgctcatccttcgaattttgctctgcaaatattaatcacttg 2243594  T
Q  396 a 396  Q
    |    
T  2243593 a 2243593  T

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