View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_18 (Length: 363)
Name: NF11660_high_18
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 54827503 - 54827163
Alignment:
| Q |
1 |
cgccatattttcttccttaccttagcttctttcctttcaattcaacaaacaacgtcacaaatcacaaatagcacaattgttgttgttgtttataaaagca |
100 |
Q |
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| T |
54827503 |
cgccatattttcttccttaccttagcttctttcctttcaattcaacaaa-------------------tagcacaattgttgttgttgtttataaaagca |
54827423 |
T |
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| Q |
101 |
aagaaaacattggcggtgaagaatgcatgtaactttgcgccaacacgtatttagacaacacaccgtcatcccatgccacgtaacatcaatgacgacacct |
200 |
Q |
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| T |
54827422 |
aagaaaacattggcggtgaagaatgcatgtaactttgcgccaacacgtatttagacaacacaccgtcatcccatgccacgtaacatcaatgacgacacct |
54827323 |
T |
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| Q |
201 |
gtcccccttttggctgatcaatcacatggaaagaagtaaattcctcttttaaattctatgtaagtagtattttgattcttaaattttacaaatacacaac |
300 |
Q |
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| T |
54827322 |
gccccccttttggctgatcaatcacatggaaagaagtaaattcctcttttaaattctatgta---agtattttgattcttaaattttacaaatacacaac |
54827226 |
T |
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| Q |
301 |
aaaactactccaattttgtagcattgcatactttgcaaaattatgtatgctaatttctgccta |
363 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
54827225 |
aaaactactccaattttgtagcattgcatagtttacaaaattatgtatgctaatttctgccta |
54827163 |
T |
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