View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_19 (Length: 362)
Name: NF11660_high_19
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 44813742 - 44814080
Alignment:
| Q |
18 |
ctcatgtgtactaaaaaactactcaggaacatattttgtgttatgttgcattcaaaactaaacaaaaatttacatctaaatcaaatctaatagtgatttg |
117 |
Q |
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| T |
44813742 |
ctcatgtgtactaaaaaactactcaggaacatattttacgttgtgttgcattcaaaactaaacaaaaatttacaactaaatcaaatctaatagtgatttg |
44813841 |
T |
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| Q |
118 |
tttttgttacatgtattacaaagagtagaggtggtgaagaaattgtgctccagatatttaaagttgctgcacaatgaattccggtgagacaggcaatttc |
217 |
Q |
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| T |
44813842 |
tttttgttacatgtattacaaagagtagaggtggtgaagaaattgtgctccagatatttgaagttgctgcacaatgaattccggtgagataagcgatttc |
44813941 |
T |
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| Q |
218 |
cggcacggtggttgctctcgagattgatattatcattaatttttatgggttttggtgctgaagtttagagaaagagcatgaacaatttgatttttgaaaa |
317 |
Q |
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| T |
44813942 |
cggcacggtggttgctgtcgagattgatatcatcattaatttttatgggttttggtgctgaagtttagagaaagagcatgaacaatttgatttttgaaga |
44814041 |
T |
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| Q |
318 |
ggtggcacacgatggccgaaaaataggataggagagaag |
356 |
Q |
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| T |
44814042 |
ggtggcacacggtggccgaaaaatagaataggagagaag |
44814080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 312
Target Start/End: Original strand, 9396372 - 9396495
Alignment:
| Q |
194 |
aattccggtgagac--aggcaatttccggcacggtggttgctctcgagattgat---attatcattaatttttatgggttttggtgctgaagtttagaga |
288 |
Q |
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| T |
9396372 |
aattccggtgagatggaggcaatttccggcacggtggttgttaatgaaattgatcaaatcatcgttaatttttatgggttttgttgctgaagtttagagg |
9396471 |
T |
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| Q |
289 |
aagagcatgaacaatttgattttt |
312 |
Q |
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| T |
9396472 |
aagaaaatgaacagtttgattttt |
9396495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 9396198 - 9396338
Alignment:
| Q |
43 |
ggaacatattttgtgttatgttgcattcaaaactaaacaaaaatttacatctaaatcaaatc----taatagtgatttgtt----tttgttacatgtatt |
134 |
Q |
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| T |
9396198 |
ggaacatatgttgtgttgtgttgcatgcaaaactaaaccagaatcaacaactaaatctgatcgatgtaatagtgattttttaatttttgttacatgtatg |
9396297 |
T |
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| Q |
135 |
acaaagagtagaggtggt---gaagaaattgtgctccagat |
172 |
Q |
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| T |
9396298 |
acaaagagtagaagtggtgaagaagaaattgtgcttcagat |
9396338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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