View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_high_2 (Length: 669)

Name: NF11660_high_2
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_high_2
NF11660_high_2
[»] chr4 (1 HSPs)
chr4 (1-655)||(52126707-52127362)


Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 52126707 - 52127362
Alignment:
Q  1 atgttgacatccaagacactagcgacgccatttttcagttggtgatgttctgactaaagaaaacttcgaatttctgaaaattgatcactccatccatcct 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  52126707 atgttgacatccaagacactagcaacaccatttttcagttggtgacgttctgactaaagaaaacttcgaatttctaaaaattaatcactccatccgtcct 52126806  T
Q  101 taggtataagacnnnnnnnataatctctctctaaacataaaatcctctaccaatttcaagagccatttattgattttgttaaaatannnnnnnatgtgaa 200  Q
    ||||||||||||       |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||    
T  52126807 taggtataagactttttt-ataaactgtctctaaacataaaatcctctaccaatttcaagagtcatttattgattttgttaaaataattttttatgtgaa 52126905  T
Q  201 ttaattatttctgcatttatgcgcaattaaa-gattaatc-tttgagtcgggtattattacaagaatgaaaagaaaatgagtgaaaggaaggaagcaaca 298  Q
    ||||||||||||| ||||||| ||||||||| |||||||| |||||||||| ||||  | |||||| |||||||||||||||||||||||||||||||||    
T  52126906 ttaattatttctgtatttatgtgcaattaaaagattaatcctttgagtcggttatttctgcaagaaagaaaagaaaatgagtgaaaggaaggaagcaaca 52127005  T
Q  299 caacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127006 caacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccct 52127105  T
Q  399 ccaattcatttcaatttccgcttaattcaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggc 498  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127106 ccaattcatttcaatttccgcttaatccaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggc 52127205  T
Q  499 gtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgcta 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127206 gtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgcta 52127305  T
Q  599 tcactccttctcgtctcagactcacctatgaagatatctggctttcttcttctgatg 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127306 tcactccttctcgtctcagactcacctatgaagatatctggctttcttcttctgatg 52127362  T

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