View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_20 (Length: 348)
Name: NF11660_high_20
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 36676849 - 36676543
Alignment:
| Q |
16 |
cactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactctagttgcaaaagaaca |
115 |
Q |
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| T |
36676849 |
cactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactcttgttgcaaaagaaca |
36676750 |
T |
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| Q |
116 |
agaacaagaacaagaacatagatctttcagttttgtagaaaaccaaacagaaaataattgtcctccttatgtagattggaataacaacaatagttccact |
215 |
Q |
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| T |
36676749 |
agaacaagaaca------tagatctttcagttttgtagaaaaccaaacagaaaataattgtcctccttatgtagattggaataacaacaatagttccact |
36676656 |
T |
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| Q |
216 |
ttttcaccaccccatttgaatgaagttcaagaaaccactactgatccaagtagtaatactaataacactcaaaactttcatgcttcaccttctgtgaaca |
315 |
Q |
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| T |
36676655 |
ttttcaccaccccatttgaatgaagttcaagaaaccactactgacccaagtagtaatactaataacactcaaaactttcatgcttcaccttctgtgaaca |
36676556 |
T |
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| Q |
316 |
cagttattcgtcc |
328 |
Q |
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| T |
36676555 |
cagttattcgtcc |
36676543 |
T |
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