View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_23 (Length: 340)
Name: NF11660_high_23
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 132188 - 132502
Alignment:
| Q |
11 |
gaagaagatggtgaagaaggtggtcaaattaataaagaggaagtaaatattatctcgtttgaaaaactagattccttaaaactttccagactcccaaatc |
110 |
Q |
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| T |
132188 |
gaagaagatggcgaagaaggtggtcaaattaataaagaggaagtaaatattatctcgtttgaaaaactagattccttaaaactttctggactcccaaatc |
132287 |
T |
|
| Q |
111 |
tagcacgtgtttctgcaaattcttgcgagatagaacttccatccttaagaaagttgctgattgctgattgtccaaagctagatacattgtttttgctaag |
210 |
Q |
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| T |
132288 |
tagcacgtgtttctgcaaattcttgcgagatagaatttccatccttaagaaagttggtgattgatgattgtccaaagctagatacattgtttttgctaag |
132387 |
T |
|
| Q |
211 |
tgcatatacaaagcacaacaatcattatgttgcatcatattcaaatcttgatggcactggtgttagtgattttgtcgaaaactacccaagatcttctaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
132388 |
tgcatatacaaagcacaacaatcattatgttgcatcatattcaaatcttgatggcactggtgttagcgattttgacgaaaactacccaagatcttctaat |
132487 |
T |
|
| Q |
311 |
tttcattttggatgt |
325 |
Q |
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||||||||||||||| |
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| T |
132488 |
tttcattttggatgt |
132502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 34552683 - 34552380
Alignment:
| Q |
14 |
gaagatggtgaagaaggtggtcaaattaataaagaggaagtaaatattatctcgtttgaaaaactagattccttaaaactttccagactcccaaatctag |
113 |
Q |
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||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| | ||| |
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| T |
34552683 |
gaagatggtgatgaaggtgaccatattaataaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatag |
34552584 |
T |
|
| Q |
114 |
cacgtgtttctgcaaattcttgcgagatagaacttccatccttaagaaagttgctgattgctgattgtccaaagctagatacattgtttttgctaagtgc |
213 |
Q |
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||| ||||||||||||||||| | |||||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
34552583 |
cacatgtttctgcaaattcttacaagatagaatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgcttttgctatgtgc |
34552484 |
T |
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| Q |
214 |
atatacaaagcacaacaatcattatgttgcatcatattcaaatcttgatggcactggtgttagtgattttgtcgaaaactacccaagatcttctaatttt |
313 |
Q |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
34552483 |
atatacaaagcacacaaatcattccactgcatcatatttaaatcttgatggcactggtgttagccattttgaagaaaacaacccaagatcttctaatttt |
34552384 |
T |
|
| Q |
314 |
catt |
317 |
Q |
| |
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|||| |
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| T |
34552383 |
catt |
34552380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 34564398 - 34564103
Alignment:
| Q |
26 |
gaaggtggtcaaattaataaagaggaagtaaatattatctcgtttgaaaaactagattccttaaaactttccagactcccaaatctagcacgtgtttctg |
125 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| | ||||||||||||||| |
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| T |
34564398 |
gaaggtggccatattaataaagaggaagtaaatatcatctcgtttgaaaaattagattccttaacactttcaggactcccaagtatagcacgtgtttctg |
34564299 |
T |
|
| Q |
126 |
caaattcttgcgagatagaacttccatccttaagaaagttgctgattgctgattgtccaaagctagatacattgtttttgctaagtgcatatacaaagca |
225 |
Q |
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||||||||| |||||||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34564298 |
caaattcttacgagatagaatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgtttttgctaaccgcatatacaaagca |
34564199 |
T |
|
| Q |
226 |
caacaatcattatgttgcatcatattcaaatcttgatggcactggtgttagtgattttgtcgaaaactacccaagatcttctaattttcattttgg |
321 |
Q |
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|||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| |
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| T |
34564198 |
aaacaatcatttcgttgcgtcatattcaaatctcgatggcaatggtgttagcgattttgaagaaaataacccaagaccttctaattttcaatttgg |
34564103 |
T |
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