View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_30 (Length: 313)
Name: NF11660_high_30
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 101 - 299
Target Start/End: Original strand, 145806 - 146003
Alignment:
| Q |
101 |
ttgtgacaaaatagttgttcaaataacatttctcttttaaataatgctcaatttagtccaattagatccatgaaagcaagacatgtggttaaaaaacaac |
200 |
Q |
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|||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
145806 |
ttgtcacaaaatagttgttcaaataacatttatcatttagataatgctcaatttagtccaattagatccatgaaagcaagacatgtggttaaaa-acaac |
145904 |
T |
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| Q |
201 |
atccaaatgctgatatttgaaattaaaacaacaaatatttatgttgataaaaagaattaacgaattacttatcctttcttccttttatcgccgtctctg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145905 |
atccaaatgctgatatttgaaattaaaacaacaaatatttgtgttgataaaaagaattaacgaattacttatcctttcttccttttatcgccgtctctg |
146003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 34848201 - 34848233
Alignment:
| Q |
109 |
aaatagttgttcaaataacatttctcttttaaa |
141 |
Q |
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| T |
34848201 |
aaatagttgttcaaataacatttctcttttaaa |
34848233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 33651048 - 33651010
Alignment:
| Q |
106 |
acaaaatagttgttcaaataacatttctcttttaaataa |
144 |
Q |
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| T |
33651048 |
acaaaatagatgttcaaatatcatttctcttttaaataa |
33651010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 25337970 - 25337938
Alignment:
| Q |
109 |
aaatagttgttcaaataacatttctcttttaaa |
141 |
Q |
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| T |
25337970 |
aaatagttgttcaaataacattactcttttaaa |
25337938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 23853891 - 23853921
Alignment:
| Q |
108 |
aaaatagttgttcaaataacatttctctttt |
138 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23853891 |
aaaatagttgttcaaataacatttctctttt |
23853921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 33278708 - 33278671
Alignment:
| Q |
101 |
ttgtgacaaaatagttgttcaaataacatttctctttt |
138 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
33278708 |
ttgtcacaaaatagttgttcaaatatcatttctctttt |
33278671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 33412947 - 33412975
Alignment:
| Q |
108 |
aaaatagttgttcaaataacatttctctt |
136 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33412947 |
aaaatagttgttcaaataacatttctctt |
33412975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 33414601 - 33414629
Alignment:
| Q |
108 |
aaaatagttgttcaaataacatttctctt |
136 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
33414601 |
aaaatagttgttcaaataacatttctctt |
33414629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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