View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_32 (Length: 300)
Name: NF11660_high_32
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 36676874 - 36677162
Alignment:
| Q |
1 |
cctcttcaggtaaacacataacaatcaatcaattttatttctatccttcgagggaaagtggaagatgatgatgaataaaatgttaagtatttttgggctt |
100 |
Q |
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| T |
36676874 |
cctcttcaggtaaacacataacaatcaatcaattttatttctatccttcgagggaaagtggaagatgatgatgaataaaatgttaagtatttttgggctt |
36676973 |
T |
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| Q |
101 |
ataaaggccttgttcaaggatacaacaatggacagtgatttttgcacgtgaaattccattaaatgtatatagatcattaactttacacggttaattgaat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676974 |
ataaaggccttgttcaaggatataacaatggacagtgatttttgcacgtgaaattccattaaatgtatatagatcattaactttacacggttaattgaat |
36677073 |
T |
|
| Q |
201 |
gatggttgttagataaaatcaaagcaattttagtcaatatcactctattattttattttagcatatgcggtcctttgagtttgattcat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36677074 |
gatggttgttagataaaatcaaagcaattttagtcaatatcactctattattttattttagcatatgcggtcctttaagtttgattcat |
36677162 |
T |
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