View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_34 (Length: 295)
Name: NF11660_high_34
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 21542945 - 21542733
Alignment:
| Q |
66 |
tttttatcaactttgtttatctgcatctaaggttagaaatttgtagggaattgagtggtttttgattgtaaattttgtccatttgttgtgtatgcata-t |
164 |
Q |
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| T |
21542945 |
tttttatcaactttgtttatctgcatttaatgttggaaatttgcagggaattgagaggtttttgattgtaaattttgtccatttgttgtgtatacatatt |
21542846 |
T |
|
| Q |
165 |
ttatggaactggtgtttattttatgctatttgttcagggacatcagcttaaaggagctcaagttgagactaattatgtcatgttannnnnnngttgtcaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || |||||||| |
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| T |
21542845 |
ttatggaactggtgtttattttatgctatttgttcagggaaatcagcttaaaggagctcaagtagagactaattatgtcatgctatttttttgttgtcaa |
21542746 |
T |
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| Q |
265 |
ctaattatgtcat |
277 |
Q |
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||||||| ||||| |
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| T |
21542745 |
ctaattaggtcat |
21542733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8631808 - 8631740
Alignment:
| Q |
1 |
atttaaaaataatttgttcaaaaacaatcttcatctatattagtgaaaagtctagtatctccttatttt |
69 |
Q |
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| T |
8631808 |
atttaaaaataatttgttcaaaaacagtcttcatctatattagtgaaaagtctagtatctccttatttt |
8631740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46673494 - 46673457
Alignment:
| Q |
1 |
atttaaaaataatttgttcaaaaacaatcttcatctat |
38 |
Q |
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| T |
46673494 |
atttaaaaataatttgtccaaaaacaatcttcatctat |
46673457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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