View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_38 (Length: 267)
Name: NF11660_high_38
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_38 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 60358 - 60111
Alignment:
| Q |
1 |
aacattggaatataccatttttcaggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60358 |
aacattggaatataccatttttcaggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgtt |
60259 |
T |
|
| Q |
101 |
atggttggtatgggccaaaaagatgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60258 |
atggttggtatgggccaaaaagatgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgtta |
60159 |
T |
|
| Q |
201 |
gcaattgggatgacatggaaaagatttggcatcataccttctataatg |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60158 |
gcaattgggatgacatggaaaagatttggcatcataccttctataatg |
60111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 8688659 - 8688888
Alignment:
| Q |
19 |
ttttcaggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaa |
118 |
Q |
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||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| ||| |
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| T |
8688659 |
ttttcaggctggatttgctggagatgatgcccctcgtgctgtgtttcccagcattgtaggtcgtcctcgtcacactggtgtgatggttggcatgggtcaa |
8688758 |
T |
|
| Q |
119 |
aaagatgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatgg |
218 |
Q |
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| T |
8688759 |
aaagatgcatatgttggtgatgaggcacagtctaagaggggtattttgactcttaaataccccattgaacatggaatcgttagcaactgggatgacatgg |
8688858 |
T |
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| Q |
219 |
aaaagatttggcatcataccttctataatg |
248 |
Q |
| |
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|||||||||||||||| |||||||| |||| |
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| T |
8688859 |
aaaagatttggcatcacaccttctacaatg |
8688888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 37051511 - 37051295
Alignment:
| Q |
32 |
tttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaaaaagatgcatatg |
131 |
Q |
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||||| |||||||||||||| | || || || || ||||| || || ||||| ||||| || || || |||||||| ||||| |||||||||||||||| |
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| T |
37051511 |
tttgcaggagatgatgcaccaagggcagtattccctagcatagtaggacgtccacgtcacacaggggtaatggttggaatgggacaaaaagatgcatatg |
37051412 |
T |
|
| Q |
132 |
ttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatggaaaagatttggca |
231 |
Q |
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| T |
37051411 |
ttggtgatgaagcacaatcaaaaagaggtattttgacattgaaatacccaattgagcatgggattgttagtaattgggatgatatggagaagatctggca |
37051312 |
T |
|
| Q |
232 |
tcataccttctataatg |
248 |
Q |
| |
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|||||| ||||| |||| |
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| T |
37051311 |
tcatactttctacaatg |
37051295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 41387481 - 41387689
Alignment:
| Q |
32 |
tttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaaaaagatgcatatg |
131 |
Q |
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||||||||||||||||| || | || |||||||| |||||||||||||| || || || || ||||| |||||||| ||||| |||||||||||||||| |
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| T |
41387481 |
tttgctggagatgatgctccaagggctgtgtttcctagcattgttggtcgaccacgccacaccggtgtgatggttggcatgggacaaaaagatgcatatg |
41387580 |
T |
|
| Q |
132 |
ttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatggaaaagatttggca |
231 |
Q |
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| T |
41387581 |
ttggtgatgaagctcagtccaagcgtggtatattgactctaaaatatccaattgaacatggtattgtgagtaactgggatgacatggagaagatttggca |
41387680 |
T |
|
| Q |
232 |
tcatacctt |
240 |
Q |
| |
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||||||||| |
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| T |
41387681 |
tcatacctt |
41387689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 1263350 - 1263125
Alignment:
| Q |
23 |
caggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaaaaag |
122 |
Q |
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| T |
1263350 |
caggctggttttgcaggcgatgatgctcctagggccgtgttccccagtattattgggcgacctcgtcataccggtgtaatggttgggatgggtcagaagg |
1263251 |
T |
|
| Q |
123 |
atgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatggaaaa |
222 |
Q |
| |
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|||| ||||| |||||||| || || ||||| | ||||||||||| | ||||| || || ||||||||||| ||||| || ||||| || |||||||| |
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| T |
1263250 |
atgcttatgtaggtgatgaagctcagtctaagaggggtatcctcacgttgaagtatcctatagagcatggtatagttagtaactgggacgatatggaaaa |
1263151 |
T |
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| Q |
223 |
gatttggcatcataccttctataatg |
248 |
Q |
| |
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|||||||||||| || || ||||||| |
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| T |
1263150 |
gatttggcatcacacattttataatg |
1263125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 43647970 - 43647759
Alignment:
| Q |
23 |
caggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaaaaag |
122 |
Q |
| |
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||||| || |||||||| |||||||| || | || |||||||| || |||||||| || ||||||||||| ||||| |||||||||||||||||||| | |
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| T |
43647970 |
caggctggatttgctggtgatgatgctcctagggctgtgtttccaagtattgttggccgacctcgtcataccggtgtcatggttggtatgggccaaaagg |
43647871 |
T |
|
| Q |
123 |
atgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatggaaaa |
222 |
Q |
| |
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|||| ||||||||||| || || ||||| ||| | ||||| || |||||||||||||| |||||||| |||||||| || || |||||||||||||| || |
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| T |
43647870 |
atgcctatgttggtgacgaagcccaatcaaaaagaggtattcttactctcaagtaccccattgagcacggtattgtcagtaactgggatgacatggagaa |
43647771 |
T |
|
| Q |
223 |
gatttggcatca |
234 |
Q |
| |
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||| |||||||| |
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| T |
43647770 |
gatctggcatca |
43647759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 67009 - 67234
Alignment:
| Q |
23 |
caggcaggctttgctggagatgatgcaccgcgtgccgtgtttcccagcattgttggtcgtcctcgtcatactggtgttatggttggtatgggccaaaaag |
122 |
Q |
| |
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||||| || ||||| |||||||||||||| | || ||||| || || ||||| ||||| || || || || ||||| |||||||||||||| ||||| | |
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| T |
67009 |
caggctggatttgccggagatgatgcaccaagggcggtgttccctagtattgtaggtcgaccacgccacaccggtgtgatggttggtatgggacaaaagg |
67108 |
T |
|
| Q |
123 |
atgcatatgttggtgatgaggcacaatctaaacgtggtatcctcactctcaagtacccaattgagcatggtattgttagcaattgggatgacatggaaaa |
222 |
Q |
| |
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||||||||||||||||||| || ||||| ||| | ||||| | ||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| |
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| T |
67109 |
atgcatatgttggtgatgaagctcaatcaaaaaggggtattttgactctaaagtacccaattgagcatggaattgttagtaactgggatgatatggaaaa |
67208 |
T |
|
| Q |
223 |
gatttggcatcataccttctataatg |
248 |
Q |
| |
|
||| |||||||| || ||||| |||| |
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| T |
67209 |
gatctggcatcacactttctacaatg |
67234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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