View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_high_5 (Length: 520)
Name: NF11660_high_5
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 37315923 - 37316415
Alignment:
| Q |
17 |
atattcaatgacaagtaactttgttgtatcctattttgtcatctttccttttaagcatgtaatataatagtcttcttctacttttgtatacgccttacca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37315923 |
atattcaatgacaagtaactttgttgtatcctattttgtcatctttccttttaagcatgtaatataatagtcttcttgtacttttgtatacgccttacca |
37316022 |
T |
|
| Q |
117 |
cttcatggagacaagttttatgacatggttaaagatagaatataatttacaatttctgacttcaaacttaaactcttttttggacatgatttattgtttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316023 |
cttcatggagacaagttttatgacatggttaaagataaaatataatttacaatttctgacttcaaacttaaactcttttttggacatgatttattgtttg |
37316122 |
T |
|
| Q |
217 |
aacttatttatccttactttttctacaagtacgtgttatgttgccattatttaatctgcatttaaatggtttaacttttctttcctccatattctagtct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316123 |
aacttatttatccttactttttctacaagtacgtgttatgttgccactatttaatctgcatttaaatggtttaacttttctttcctccatattctagtct |
37316222 |
T |
|
| Q |
317 |
acttaatcttggtttctcacgttatagaaggttactctctttaagtaaattattacagtacacgattaaattaaattacaagactaatcttcaatttgac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316223 |
acttaatcttggtttctcacgttatagaaggttactctctttaagtaaattattacagtacacgattaaattaaattacaagactaatcttcaatttgac |
37316322 |
T |
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| Q |
417 |
aagtattttagagttcagccggaagctatgttagaatttgaattcggattttctcaaacaattcgtcatgaagttcattaatcatttattcat |
509 |
Q |
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|| ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37316323 |
aaatattttagagttcggtcgaaagctatgttagaatttgaattcggattttctcaaacaattcgtcatcaagttcattaatcatttattcat |
37316415 |
T |
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