View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_1 (Length: 909)
Name: NF11660_low_1
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 551 - 891
Target Start/End: Original strand, 15114077 - 15114417
Alignment:
| Q |
551 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114077 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
15114176 |
T |
|
| Q |
651 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114177 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
15114276 |
T |
|
| Q |
751 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
850 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114277 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
15114376 |
T |
|
| Q |
851 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15114377 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
15114417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 15113201 - 15113556
Alignment:
| Q |
11 |
acatcaattgagaaacagatgaatcttcactaaataacggttttcttaacagttaataacccctctctgcttttactggatcttgatcgttgcggcgaac |
110 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
15113201 |
acatcaattgagtaacagatatatcttcactaaacaacggttttcttaacagttaataacccctctctgcttttagtggatcttgatcgatgcggcgaat |
15113300 |
T |
|
| Q |
111 |
tttcaacatgtttatgttcacctcgcttttgcattcttttagacacttctgatgcattcatctcccatgttgaccgcgtatgcttctcaccagatctctc |
210 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||| |||||||| |
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| T |
15113301 |
tttcaacatctttatgttcacctcgcatttgcattcttttagacacttctgatgcattcttctcccacgttgaccgcataagcttctcacctgatctctc |
15113400 |
T |
|
| Q |
211 |
tctgcgagaatcactcgaaggcttttcagtacctaacttcatttcaacagagtttcttccccttctgttggcagaattcgattcctcaaagtttcttccc |
310 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15113401 |
tctacgagaatctctcgaaggcttttcagtacctaacttcatttccacagagtttcttccccttctgttggcagaattcgattccttaaagtttcttccc |
15113500 |
T |
|
| Q |
311 |
cttctattggaagaatttgtttccaccatgtttcttccccttctattggtagaatt |
366 |
Q |
| |
|
|||||||| | ||| |||| |||| | | ||||||||||||||||||| ||||||| |
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|
| T |
15113501 |
cttctattagtagagtttgattcctcaaagtttcttccccttctattgttagaatt |
15113556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 296 - 486
Target Start/End: Original strand, 15113822 - 15114012
Alignment:
| Q |
296 |
tcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggtagaattcatttcaacaaagttgtttcgtccccttc |
395 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
15113822 |
tcaaagtttcttccccttatattggaagaattcgtttccgccacgtttcttccccttctattggcagaattcatttcaacaaagttgtttcttccccttc |
15113921 |
T |
|
| Q |
396 |
tattggcagagcttttacgagtacccattgactcctcctgttcatcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
486 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15113922 |
tattggcagagcttttacgagtacccatcgactcctcctcttcatcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
15114012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 15113607 - 15113712
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
360 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||| |||||| | |||| | | ||||||||||||||||||||| |
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|
| T |
15113607 |
agtttcttccccttctgttggtaggattagattcctcaaagtttcttccccttctgttggtagaattagattcctcgaagtttcttccccttctattggt |
15113706 |
T |
|
| Q |
361 |
agaatt |
366 |
Q |
| |
|
|||||| |
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|
| T |
15113707 |
agaatt |
15113712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 15113646 - 15113751
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
360 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||| | |||| | | ||||||||||||||| ||||| |
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|
| T |
15113646 |
agtttcttccccttctgttggtagaattagattcctcgaagtttcttccccttctattggtagaattagattcctcaaagtttcttccccttctgttggt |
15113745 |
T |
|
| Q |
361 |
agaatt |
366 |
Q |
| |
|
| |||| |
|
|
| T |
15113746 |
aaaatt |
15113751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 15113685 - 15113790
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
360 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| | |||||| |||| | | ||||||||||||||| ||||| |
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|
| T |
15113685 |
agtttcttccccttctattggtagaattagattcctcaaagtttcttccccttctgttggtaaaatttgattcctcaaagtttcttccccttctgttggt |
15113784 |
T |
|
| Q |
361 |
agaatt |
366 |
Q |
| |
|
|||||| |
|
|
| T |
15113785 |
agaatt |
15113790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 15113724 - 15113821
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattg |
358 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||| |||||||| |||| | | ||||||||||||| ||||| |
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|
| T |
15113724 |
agtttcttccccttctgttggtaaaatttgattcctcaaagtttcttccccttctgttggtagaatttgattcctcaaagtttcttccccttttattg |
15113821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 15113579 - 15113673
Alignment:
| Q |
272 |
cttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggtagaatt |
366 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||||||||||||| |||| || ||| | |||| | | ||||||||||||||| ||||||||||| |
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|
| T |
15113579 |
cttctattggtagagttcgattcctcaaagtttcttccccttctgttggtaggattagattcctcaaagtttcttccccttctgttggtagaatt |
15113673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 15113826 - 15113927
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccacca---tgtttcttccccttctatt |
357 |
Q |
| |
|
|||||||||||||| | |||| |||||||| |||| | | |||||||||||||||||||| |||||| |||| || | ||||||||||||||||||| |
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|
| T |
15113826 |
agtttcttccccttatattggaagaattcgtttccgccacgtttcttccccttctattggcagaattcatttcaacaaagttgtttcttccccttctatt |
15113925 |
T |
|
| Q |
358 |
gg |
359 |
Q |
| |
|
|| |
|
|
| T |
15113926 |
gg |
15113927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 15113529 - 15113630
Alignment:
| Q |
261 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
360 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||| ||||| | |||||||||| ||| || | |||| | | ||||||||||||||| ||||| |
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|
| T |
15113529 |
agtttcttccccttctattgttagaattggattcctcaaaatttctatctcttctattggtagagttcgattcctcaaagtttcttccccttctgttggt |
15113628 |
T |
|
| Q |
361 |
ag |
362 |
Q |
| |
|
|| |
|
|
| T |
15113629 |
ag |
15113630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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