View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_low_11 (Length: 453)

Name: NF11660_low_11
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_low_11
NF11660_low_11
[»] scaffold0939 (1 HSPs)
scaffold0939 (18-443)||(1701-2125)
[»] chr2 (14 HSPs)
chr2 (275-350)||(11133070-11133145)
chr2 (272-348)||(2114458-2114533)
chr2 (275-342)||(16261335-16261401)
chr2 (275-348)||(10262736-10262808)
chr2 (277-348)||(32527105-32527176)
chr2 (276-342)||(34620521-34620586)
chr2 (275-348)||(580809-580881)
chr2 (303-348)||(2935813-2935858)
chr2 (275-348)||(3179321-3179393)
chr2 (275-348)||(30474221-30474293)
chr2 (275-347)||(26807110-26807181)
chr2 (290-350)||(29664597-29664657)
chr2 (275-347)||(44187701-44187773)
chr2 (275-339)||(44721730-44721793)
[»] chr3 (16 HSPs)
chr3 (275-350)||(43774179-43774254)
chr3 (275-348)||(16006532-16006604)
chr3 (275-342)||(31576513-31576580)
chr3 (278-342)||(40786283-40786346)
chr3 (275-350)||(9624977-9625052)
chr3 (275-350)||(19137614-19137688)
chr3 (275-350)||(27183707-27183782)
chr3 (295-350)||(41767814-41767869)
chr3 (279-353)||(7448393-7448467)
chr3 (279-353)||(7456535-7456609)
chr3 (276-338)||(27983865-27983926)
chr3 (277-342)||(8475418-8475482)
chr3 (275-348)||(42271039-42271111)
chr3 (275-340)||(43566822-43566886)
chr3 (282-350)||(14868679-14868747)
chr3 (275-347)||(36331752-36331824)
[»] chr1 (12 HSPs)
chr1 (283-350)||(9527420-9527487)
chr1 (275-350)||(2643841-2643915)
chr1 (275-350)||(29491464-29491539)
chr1 (275-348)||(24661979-24662051)
chr1 (275-350)||(2052708-2052783)
chr1 (275-350)||(9768835-9768909)
chr1 (275-342)||(49251421-49251487)
chr1 (272-342)||(1721143-1721212)
chr1 (275-348)||(18923911-18923983)
chr1 (302-347)||(50581992-50582037)
chr1 (302-350)||(35111644-35111692)
chr1 (324-356)||(40375361-40375393)
[»] chr8 (10 HSPs)
chr8 (273-350)||(21133543-21133620)
chr8 (275-350)||(33982184-33982259)
chr8 (276-335)||(43001231-43001290)
chr8 (66-112)||(40071814-40071860)
chr8 (275-348)||(9524954-9525026)
chr8 (275-348)||(24608509-24608581)
chr8 (276-340)||(10328407-10328471)
chr8 (275-350)||(2800013-2800088)
chr8 (275-348)||(15042391-15042463)
chr8 (275-348)||(43468731-43468803)
[»] chr6 (9 HSPs)
chr6 (275-348)||(19642573-19642645)
chr6 (275-350)||(9064860-9064935)
chr6 (275-348)||(22389776-22389848)
chr6 (290-350)||(2945590-2945650)
chr6 (302-350)||(5134487-5134535)
chr6 (275-342)||(11982765-11982830)
chr6 (275-348)||(7563602-7563674)
chr6 (275-348)||(10373592-10373664)
chr6 (282-342)||(35190766-35190825)
[»] chr7 (7 HSPs)
chr7 (275-350)||(4169070-4169145)
chr7 (275-350)||(21285379-21285454)
chr7 (275-350)||(41417301-41417376)
chr7 (275-350)||(29658298-29658373)
chr7 (272-342)||(14967657-14967726)
chr7 (272-342)||(15397133-15397202)
chr7 (276-350)||(41139081-41139155)
[»] chr5 (12 HSPs)
chr5 (275-350)||(5156891-5156966)
chr5 (276-350)||(6806667-6806741)
chr5 (282-350)||(3102160-3102228)
chr5 (275-342)||(1244753-1244819)
chr5 (296-350)||(4793963-4794017)
chr5 (282-348)||(18872518-18872583)
chr5 (284-350)||(40250212-40250277)
chr5 (275-348)||(4216841-4216913)
chr5 (275-348)||(33800890-33800962)
chr5 (275-348)||(36045160-36045233)
chr5 (272-340)||(9408973-9409041)
chr5 (272-340)||(42801464-42801531)
[»] chr4 (14 HSPs)
chr4 (283-350)||(12820439-12820506)
chr4 (275-349)||(34106597-34106670)
chr4 (272-350)||(40150467-40150545)
chr4 (275-348)||(52031203-52031276)
chr4 (302-350)||(30152122-30152170)
chr4 (282-350)||(36008269-36008337)
chr4 (275-350)||(28520757-28520832)
chr4 (275-350)||(42411480-42411555)
chr4 (275-350)||(48512193-48512268)
chr4 (275-348)||(24234100-24234172)
chr4 (275-348)||(47017972-47018044)
chr4 (276-348)||(13211379-13211450)
chr4 (272-348)||(27921893-27921968)
chr4 (296-348)||(55266482-55266533)
[»] scaffold0112 (1 HSPs)
scaffold0112 (276-350)||(17958-18032)
[»] scaffold0308 (1 HSPs)
scaffold0308 (275-350)||(7070-7145)
[»] scaffold0070 (1 HSPs)
scaffold0070 (284-342)||(12567-12625)


Alignment Details
Target: scaffold0939 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 1701 - 2125
Alignment:
Q  18 atgtggaactgcttaggttgatatataagttgaaaacggtttatatagatgttataagttctttccataaactctcccaaacactctcacatgtttatgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1701 atgtggaactgcttaggttgatatataagttgaaaacggtttatatagatgttataaattctttccataaactctcccaaacactctcacatgtttatgc 1800  T
Q  118 caataaaattagtttaaataagctttaagtaccgacacttttgatagaaagtgtgaatttggtgtccgacatgtgctagtctctgacaacacaccgacac 217  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1801 caataaa-ttagtttaaataagctttaagtactgacacttttgatagaaagtgtgactttggtgtccgacatgtgctagtctctgacaacacaccgacac 1899  T
Q  218 acgtgannnnnnngctttatctagctggtggctagaattcattggtgnnnnnnntgaggtgtctggggttcaaaccctgacccatgcatattacaatgca 317  Q
    | ||||       ||||||| ||||||||||||||||||||||||||       |||||||| |||||||||||| ||||||||||||||||||||| ||    
T  1900 atgtgaattttttgctttatgtagctggtggctagaattcattggtgaaaaaaatgaggtgtatggggttcaaacactgacccatgcatattacaataca 1999  T
Q  318 ttgttactaccaactgagctatgcttacggggataccaacgcatgtgatttgattatattgaattatgtcgttttcacagttttatcggtgtcaatgtgt 417  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2000 ttgtcactaccaactgagctatgcttacggggataccaacacatgtgatttgattatattgaattatgtcattttcacagttttatcggtatcaatgtgt 2099  T
Q  418 cggtatgcattttgaatctgatgtcc 443  Q
    ||||||||||||||||||| ||||||    
T  2100 cggtatgcattttgaatctaatgtcc 2125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 11133145 - 11133070
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| ||||| ||||||| ||||||||||||  ||||||||||||||||||| |||||||    
T  11133145 ggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagctatgctcacgggga 11133070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 2114458 - 2114533
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    ||||||||| ||||||| ||||| ||||| | ||||| | ||||||||||| ||||||||||||||||||| |||||    
T  2114458 tgaggtgtccggggttcgaaccccgacccctacatataataatgcattgtt-ctaccaactgagctatgctcacggg 2114533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 16261401 - 16261335
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||||||||||| ||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||    
T  16261401 ggtgtctggggttcgaactctgacccctgcatataacaatgcatt-atactaccaattgagctatgct 16261335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 10262808 - 10262736
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| ||||| ||||||| | ||||||||| | |||||||||||| |||||| |||||    
T  10262808 ggtgtctggggttcgaaccccgacccctgcatataataatgcattg-tcctaccaactgagttatgctcacggg 10262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 32527105 - 32527176
Alignment:
Q  277 tgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||| |||||||    
T  32527105 tgtctggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgtttacggg 32527176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 34620586 - 34620521
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||||||||||||||||  |||| ||||||| | ||||||||| | |||||||| ||||||||||    
T  34620586 gtgtctggggttcaaaccccaacccttgcatataataatgcattg-tcctaccaaccgagctatgct 34620521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 580809 - 580881
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  580809 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 580881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 2935858 - 2935813
Alignment:
Q  303 gcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||||||||| || |||||||||||||||| |||||    
T  2935858 gcatataacaatgcattgttcctgccaactgagctatgctcacggg 2935813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 3179393 - 3179321
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||| ||||| ||||  ||||| ||||||| | ||||||||||| |||||||||||| |||||| |||||    
T  3179393 ggtgtctgaggttcgaacctcgacccctgcatataataatgcattgtt-ctaccaactgagttatgctcacggg 3179321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 30474221 - 30474293
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||  | ||| ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  30474221 ggtgtctggggttcgaacctcggcccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 30474293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 26807110 - 26807181
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgg 347  Q
    |||| ||||||||| ||||||| ||| ||||||| | ||||||||||  |||||||||||| |||||| ||||    
T  26807110 ggtgcctggggttcgaaccctggcccctgcatataataatgcattgtc-ctaccaactgagttatgctcacgg 26807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 29664657 - 29664597
Alignment:
Q  290 aaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||||| ||||||| ||||||||||||  || |||| ||||||||||| |||||||    
T  29664657 aaccccgacccctgcatataacaatgcattgtccctgccaattgagctatgctcacgggga 29664597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 44187773 - 44187701
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgg 347  Q
    |||||||||||||| ||||| ||||| ||||||| | |||||||| |  || |||||||| ||||||| ||||    
T  44187773 ggtgtctggggttcgaaccccgacccctgcatataataatgcattatccctgccaactgaactatgctcacgg 44187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 44721730 - 44721793
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctat 339  Q
    |||||| | ||||| ||||| ||||| ||||||| | ||||||||||| ||||||||||||||||    
T  44721730 ggtgtccgaggttcgaaccccgacccctgcatataataatgcattgtt-ctaccaactgagctat 44721793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 43774254 - 43774179
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||||  || ||||||||||||| || |||||||    
T  43774254 ggtgtctggggttcgaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatactcacgggga 43774179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 16006532 - 16006604
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| ||| | ||||||||| ||||||||||| |||||||||||| |||||| |||||    
T  16006532 ggtgtctggggttcgaaccccgactcttgcatattataatgcattgtt-ctaccaactgagttatgctcacggg 16006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 31576580 - 31576513
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||||||| |||| | |||  |||| ||||||| ||||||||||||| |||||||||||||||||||    
T  31576580 ggtgtctggagttcgagccccaacccctgcatataacaatgcattgttcctaccaactgagctatgct 31576513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 40786346 - 40786283
Alignment:
Q  278 gtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||| ||||| ||||| ||||||||||||| | ||||||||| | |||||||||||||||||||    
T  40786346 gtctgaggttcgaaccccgacccatgcatataataatgcattg-tcctaccaactgagctatgct 40786283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 9625052 - 9624977
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  9625052 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 9624977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 19137688 - 19137614
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||| ||||  | ||| ||||||| ||||||||| ||| || |||||||||||||||| |||||||    
T  19137688 ggtgtctggggttcgaacctcggcccctgcatataacaatgcat-gttcctgccaactgagctatgctcacgggga 19137614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 27183707 - 27183782
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  27183707 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 27183782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 41767814 - 41767869
Alignment:
Q  295 tgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||||||||||| || |||||||| ||||||| |||||||    
T  41767814 tgacccctgcatataacaatgcattgttcctgccaactgaactatgctcacgggga 41767869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 7448393 - 7448467
Alignment:
Q  279 tctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggggatac 353  Q
    |||||||||| || || | ||| ||||||| | ||||||||||  ||| ||||||||||||||| ||||||||||    
T  7448393 tctggggttcgaatcccggcccctgcatataataatgcattgtccctatcaactgagctatgctcacggggatac 7448467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 7456535 - 7456609
Alignment:
Q  279 tctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggggatac 353  Q
    |||||||||| || || | ||| ||||||| | ||||||||||  ||| ||||||||||||||| ||||||||||    
T  7456535 tctggggttcgaatcccggcccctgcatataataatgcattgtccctatcaactgagctatgctcacggggatac 7456609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 27983926 - 27983865
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagcta 338  Q
    ||||||||||||||||||| ||||| |||||| || |||||| | || |||||||||||||||    
T  27983926 gtgtctggggttcaaaccccgacccctgcata-taaaatgcaatatttctaccaactgagcta 27983865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 8475482 - 8475418
Alignment:
Q  277 tgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||||| ||||||||| ||||  ||||||| | ||||||||||  |||||||||||||||||||    
T  8475482 tgtctgggattcaaaccccgacctctgcatatcataatgcattgtc-ctaccaactgagctatgct 8475418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 42271039 - 42271111
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| || |||| ||||| | ||| ||||||| ||||||||||||  ||||||||||||||||||| |||||    
T  42271039 ggtgtccggagttcgaaccccggcccctgcatataacaatgcattgtc-ctaccaactgagctatgctcacggg 42271111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 43566822 - 43566886
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatg 340  Q
    |||||||| ||||| ||||| ||||| ||||||| | ||||||||||  |||||||||||||||||    
T  43566822 ggtgtctgaggttcgaaccccgacccctgcatataataatgcattgtc-ctaccaactgagctatg 43566886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 14868747 - 14868679
Alignment:
Q  282 ggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  14868747 ggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 14868679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 36331752 - 36331824
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgg 347  Q
    |||||| ||||||| ||||| ||||| ||||||| | ||||||||||  || |||| ||||||||||| ||||    
T  36331752 ggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgccaattgagctatgctcacgg 36331824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 9527487 - 9527420
Alignment:
Q  283 gggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||| ||||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  9527487 gggttcaaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggga 9527420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 2643841 - 2643915
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||||||||| ||||||||||||| | |||||| |||  || |||||| ||||||||| |||||||    
T  2643841 ggtgtctggggttcaaaccccgacccatgcatataataatgca-tgtctctgccaactaagctatgctcacgggga 2643915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 29491539 - 29491464
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| ||||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  29491539 ggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 29491464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 24662051 - 24661979
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| || |||||||| ||||||| | ||||||||| | ||||||| ||||||||||| |||||    
T  24662051 ggtgtctggggttcgaatcctgacccctgcatataataatgcattg-tcctaccaattgagctatgctcacggg 24661979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 2052708 - 2052783
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  2052708 ggtgtccggggttcgaaccccggcccctgcatatgataatgcattgtccctgccaactgagctatgctcacgggga 2052783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 9768835 - 9768909
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| ||||| ||||||| ||||||||| ||  || |||||||||||||||| |||||||    
T  9768835 ggtgtccggggttcgaaccccgacccctgcatataacaatgcat-gtccctgccaactgagctatgctcacgggga 9768909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 49251421 - 49251487
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||||||||||| ||||| ||||| ||||||| | ||||||||| | |||||||||||| ||||||    
T  49251421 ggtgtctggggttcgaaccccgacccctgcatataataatgcattg-tcctaccaactgagttatgct 49251487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 1721212 - 1721143
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||||||| ||||||| || || | ||| ||||||| ||||||||| ||| |||||||||||||||||||    
T  1721212 tgaggtgtccggggttcgaaacccggcccctgcatataacaatgcat-gttcctaccaactgagctatgct 1721143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 18923911 - 18923983
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| | ||||| |||||||| || ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  18923911 ggtgtccgaggttcgaaccctgaaccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 18923983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 50581992 - 50582037
Alignment:
Q  302 tgcatattacaatgcattgttactaccaactgagctatgcttacgg 347  Q
    |||||||| |||||||||||  ||||||||||||||||||| ||||    
T  50581992 tgcatatttcaatgcattgtctctaccaactgagctatgctcacgg 50582037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 35111692 - 35111644
Alignment:
Q  302 tgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| | ||||||||||| ||| ||||||||||||||| |||||||    
T  35111692 tgcatataataatgcattgttcctatcaactgagctatgctcacgggga 35111644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 40375361 - 40375393
Alignment:
Q  324 ctaccaactgagctatgcttacggggataccaa 356  Q
    ||||||||||||||||||| |||||||||||||    
T  40375361 ctaccaactgagctatgctcacggggataccaa 40375393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 21133543 - 21133620
Alignment:
Q  273 gaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||||| ||||| ||| | ||||||| | ||||||||||| || ||||||||| |||||| |||||||    
T  21133543 gaggtgtctggggttcgaaccccgactcctgcatataataatgcattgttcctgccaactgagttatgctcacgggga 21133620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 33982259 - 33982184
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||| ||||| ||||| ||||||| |||||| | |||| ||  ||||||||||||||| |||||||    
T  33982259 ggtgtctggggttcgaaccccgacccctgcatataacaatgtaatgtttctgtcaactgagctatgctcacgggga 33982184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 43001290 - 43001231
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgag 335  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||  ||||||| ||||    
T  43001290 gtgtccggggttcaaaccctggcacatgcatattacaatgcattgtccctaccaattgag 43001231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 40071814 - 40071860
Alignment:
Q  66 atgttataagttctttccataaactctcccaaacactctcacatgtt 112  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  40071814 atgtcataagttgtttccataagctctcccaaacactctcacatgtt 40071860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 9525026 - 9524954
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| | ||| ||||||| | ||||||||| | ||||||||||||||||||| |||||    
T  9525026 ggtgtctggggttcgaaccccggcccctgcatataataatgcattg-tcctaccaactgagctatgctcacggg 9524954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 24608509 - 24608581
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| | ||| ||||||| | ||||||||| | ||||||||||||||||||| |||||    
T  24608509 ggtgtctggggttcgaaccccggcccctgcatataataatgcattg-tcctaccaactgagctatgctcacggg 24608581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 10328471 - 10328407
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatg 340  Q
    |||||||||||||||||||| |||| ||||||| | |||| |||||| || ||||||||| ||||    
T  10328471 gtgtctggggttcaaaccctaacccctgcatataataatgtattgttcctgccaactgaggtatg 10328407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 2800088 - 2800013
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  2800088 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 2800013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 15042391 - 15042463
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  15042391 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 15042463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 43468731 - 43468803
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| || |||| ||||| ||||| | ||||| ||||||||||||  ||||||||||||||||||| |||||    
T  43468731 ggtgtccggagttcgaaccccgacccctacatataacaatgcattgtc-ctaccaactgagctatgctcacggg 43468803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 19642573 - 19642645
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| |||| |||||||| | ||||||||| | ||||||||||||||||||| |||||    
T  19642573 ggtgtctggggttcgaaccccgaccgatgcatataataatgcattg-tcctaccaactgagctatgctcacggg 19642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 9064935 - 9064860
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  9064935 ggtgtctggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 9064860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 22389776 - 22389848
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||| ||| ||||||||||| ||||||| | ||||||||| | ||||||||||||||||||| |||||    
T  22389776 ggtgtccgggattcgaaccctgacccctgcatataataatgcattg-tcctaccaactgagctatgctcacggg 22389848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 2945650 - 2945590
Alignment:
Q  290 aaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  2945650 aaccccgacccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggga 2945590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 5134487 - 5134535
Alignment:
Q  302 tgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| ||||||||||||  || ||||||||||||||||||||||||    
T  5134487 tgcatataacaatgcattgtctctgccaactgagctatgcttacgggga 5134535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 11982830 - 11982765
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||| ||||||||||||| ||||| ||||||| | |||||||| || |||||||||||||||||||    
T  11982830 ggtgtccggggttcaaaccc-gacccctgcatataataatgcattatt-ctaccaactgagctatgct 11982765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 7563602 - 7563674
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||  ||||||||||| ||||| | | ||||||||||  ||||||||||||||||||| |||||    
T  7563602 ggtgtccggggtttgaaccctgacccctgcatgtaataatgcattgtc-ctaccaactgagctatgctcacggg 7563674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 10373664 - 10373592
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||| ||||| ||||| ||||||| | ||||||||||| ||||||||| || |||||| |||||    
T  10373664 ggtgtccggggttcgaaccccgacccctgcatataataatgcattgtt-ctaccaactaagttatgctcacggg 10373592  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 35190825 - 35190766
Alignment:
Q  282 ggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||||| ||| | ||||| ||||||| | ||||||||||| |||||||||||||||||||    
T  35190825 ggggttcgaactccgacccctgcatataataatgcattgtt-ctaccaactgagctatgct 35190766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 4169145 - 4169070
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||||||||| | ||| ||||||| ||||| ||||||  || |||||||||||||||| |||||||    
T  4169145 ggtgtccggggttcaaaccccggcccttgcatataacaatacattgtccctgccaactgagctatgctcacgggga 4169070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 21285379 - 21285454
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  21285379 ggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggga 21285454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 41417301 - 41417376
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||||||||||| ||||| ||||| ||||||| |  ||||| |||| || |||||||||||||||| |||||||    
T  41417301 ggtgtctggggttcgaaccccgacccctgcatataatgatgcactgttcctgccaactgagctatgctcacgggga 41417376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 29658298 - 29658373
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| ||||||||||||  || |||| ||||||||||| |||||||    
T  29658298 ggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtcgctgccaattgagctatgctcacgggga 29658373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 14967657 - 14967726
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||||||||| ||||||||||| ||||| | ||||| | ||||||||| | |||||||||||| ||||||    
T  14967657 tgaggtgtctgaggttcaaaccccgacccctacatataataatgcattg-tcctaccaactgagttatgct 14967726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 15397133 - 15397202
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||||||||| ||||||||||| ||||| | ||||| | ||||||||| | |||||||||||| ||||||    
T  15397133 tgaggtgtctgaggttcaaaccccgacccctacatataataatgcattg-tcctaccaactgagttatgct 15397202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 41139155 - 41139081
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||| ||| ||||| ||||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  41139155 gtgtccgggattcgaaccccgacccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 41139081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 5156966 - 5156891
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| |||||| |||| |||||| ||||||| |||||||||||||  |  ||||||||||||||| |||||||    
T  5156966 ggtgtctagggttcgaaccttgacccttgcatataacaatgcattgttcatgtcaactgagctatgctcacgggga 5156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 6806667 - 6806741
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||||||| || || ||||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  6806667 gtgtccggggttcgaatcccgacccctgcatataacaatgcattgtctctgccaactgagctatgctcacgggga 6806741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 3102160 - 3102228
Alignment:
Q  282 ggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| ||||| ||| | | ||||| ||||||||||||  || ||||||||||||||||||||||||    
T  3102160 ggggttcgaaccccgactcctacatataacaatgcattgtccctgccaactgagctatgcttacgggga 3102228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 1244753 - 1244819
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    |||||||||||||| ||||||||||| ||||||| | ||||| ||| | |||||||||| ||||||||    
T  1244753 ggtgtctggggttcgaaccctgacccctgcatataataatgctttg-tcctaccaactgtgctatgct 1244819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 4794017 - 4793963
Alignment:
Q  296 gacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||||||||| ||||||||||  ||||||| ||||||||||| |||||||    
T  4794017 gacccctgcatattataatgcattgtccctaccaattgagctatgctcacgggga 4793963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 18872583 - 18872518
Alignment:
Q  282 ggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    ||||||| ||||| ||||| ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  18872583 ggggttcgaaccccgacccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 18872518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 40250212 - 40250277
Alignment:
Q  284 ggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||| ||||| ||| | ||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  40250212 ggttcgaaccccgactcctgcatataacaatgcat-gttactgccaactgagctatgctcacgggga 40250277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 4216841 - 4216913
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||| ||||||| |  |||| ||||||| |||||||||||||  |  |||||||||||||||||||||    
T  4216841 ggtgtctgggattcaaactccaacccctgcatataacaatgcattgtt-tttgcaactgagctatgcttacggg 4216913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 33800962 - 33800890
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| | ||| ||||||| | ||||||||| | |||||||||||| |||||| |||||    
T  33800962 ggtgtctggggttcgaaccccggcccctgcatataataatgcattg-tcctaccaactgagttatgctcacggg 33800890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 36045160 - 36045233
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||| ||||| ||||| ||||||| | |||||||||||  |  ||||||||||||||| |||||    
T  36045160 ggtgtccggggttcgaaccccgacccctgcatataataatgcattgttcttgtcaactgagctatgctcacggg 36045233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 9408973 - 9409041
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatg 340  Q
    ||||||||| ||||||| ||| | ||||| ||||||| ||||||||||||  || ||||||||| ||||    
T  9408973 tgaggtgtccggggttcgaactccgacccctgcatataacaatgcattgtccctgccaactgagttatg 9409041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 42801464 - 42801531
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatg 340  Q
    ||||||||| ||||||| ||||| ||||| ||||||| | |||||||| | | ||||||||||||||||    
T  42801464 tgaggtgtccggggttcgaaccccgacccctgcatataataatgcattatca-taccaactgagctatg 42801531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 12820439 - 12820506
Alignment:
Q  283 gggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||| ||||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  12820439 gggttctaaccccgacccctgcatataacaatgcattgtctctgccaactgagctatgctcacgggga 12820506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 34106670 - 34106597
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggg 349  Q
    |||||||||||||| ||||| ||||  ||||||| | ||||||||||| || |||||||||||||||| ||||||    
T  34106670 ggtgtctggggttcgaaccc-gacctctgcatataataatgcattgttcctgccaactgagctatgctcacgggg 34106597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 40150545 - 40150467
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||||| ||||||| ||||| ||||| || |||| | ||||||||||| || |||||||| ||||||| |||||||    
T  40150545 tgaggtgtccggggttcgaaccccgacccctgtatataataatgcattgttcctgccaactgaactatgctcacgggga 40150467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 52031276 - 52031203
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||||||||||| ||||| ||||| |||||||   ||||||||||| || |||||||||||| ||| |||||    
T  52031276 ggtgtctggggttcgaaccccgacccctgcatatactaatgcattgttcctgccaactgagctaagctcacggg 52031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 30152170 - 30152122
Alignment:
Q  302 tgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| ||||||||||||| || |||||||||||||||| |||||||    
T  30152170 tgcatataacaatgcattgttcctgccaactgagctatgctcacgggga 30152122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 36008337 - 36008269
Alignment:
Q  282 ggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||| ||||| | ||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  36008337 ggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggga 36008269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 28520757 - 28520832
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  || |||||||||||||||| |||||||    
T  28520757 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggga 28520832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 42411480 - 42411555
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| ||||| ||||||| |  |||||||||  || |||||||||||||||| |||||||    
T  42411480 ggtgtccggggttcgaaccccgacccctgcatataattatgcattgtccctgccaactgagctatgctcacgggga 42411555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 48512268 - 48512193
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||| | ||||||  ||| ||||||| ||||||||||||  || |||||||||||||||| |||||||    
T  48512268 ggtgtccggggtacgaaccctagcccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggga 48512193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 24234100 - 24234172
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||||||||| | ||| ||||||| | |||||||||   ||||||||||||||||||| |||||    
T  24234100 ggtgtccggggttcaaaccccggcccctgcatataataatgcattg-acctaccaactgagctatgctcacggg 24234172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 47017972 - 47018044
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  ||||||||||||||||||| |||||    
T  47017972 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggg 47018044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 13211379 - 13211450
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    ||||| ||||||| ||||| ||||||||||||| | ||||||||| | ||||||||||| |||| || |||||    
T  13211379 gtgtccggggttcgaaccccgacccatgcatataataatgcattg-tcctaccaactgaactatactcacggg 13211450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 27921968 - 27921893
Alignment:
Q  272 tgaggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    |||| |||||||||||| ||||| | ||| ||||||| | ||||||| ||  ||||||||||||||||||| |||||    
T  27921968 tgagatgtctggggttcgaaccccggcccctgcatataataatgcat-gtccctaccaactgagctatgctcacggg 27921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 55266482 - 55266533
Alignment:
Q  296 gacccatgcatattacaatgcattgttactaccaactgagctatgcttacggg 348  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| |||||    
T  55266482 gacccctgcatataataatgcattgtt-ctaccaactgagctatgctcacggg 55266533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 17958 - 18032
Alignment:
Q  276 gtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    ||||||||||||| |||||   ||| ||||||| ||||||||||||  ||||||| ||||||||||| |||||||    
T  17958 gtgtctggggttcgaaccccagcccctgcatataacaatgcattgtccctaccaattgagctatgctcacgggga 18032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 7145 - 7070
Alignment:
Q  275 ggtgtctggggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgcttacgggga 350  Q
    |||||| ||||||| ||||| | ||| ||||||| | ||||||||||  ||| ||||||||||||||| |||||||    
T  7145 ggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctaacaactgagctatgctcacgggga 7070  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 12625 - 12567
Alignment:
Q  284 ggttcaaaccctgacccatgcatattacaatgcattgttactaccaactgagctatgct 342  Q
    ||||| ||||||||||| ||||||| | ||||||||||  || ||||||||||||||||    
T  12625 ggttcgaaccctgacccctgcatataataatgcattgtccctgccaactgagctatgct 12567  T

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