View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_14 (Length: 425)
Name: NF11660_low_14
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 39632253 - 39632646
Alignment:
| Q |
11 |
cacagaactgagagatttcagcgcagacgcggctgcaaagctacttggtatgtgttgtgttgtgtttaatcatgggattttaaagcttagagctatataa |
110 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39632253 |
cacagaacttagagatttcagtgcagacgcggctgcaaagctacttggtatgtgttgtgtt-----taatcatgggattttaaagcttagagctatataa |
39632347 |
T |
|
| Q |
111 |
gcttgctgtactaattgcannnnnnnncatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcactt |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39632348 |
gcttgctgtactaattgcattttttttcatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcactt |
39632447 |
T |
|
| Q |
211 |
gttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaaccatttctttgttttctgtggttttgcaggtttagaggaagtacttgga |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39632448 |
gttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaactatttctttgttttctgtggttttgcaggtttagaggaagtacttgga |
39632547 |
T |
|
| Q |
311 |
gagaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcacagattacttcacagtaaaattatctggtttgatttg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39632548 |
gagaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcacagattacttcacagtaaaattatctggtttgatttg |
39632646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 109 - 409
Target Start/End: Original strand, 39634530 - 39634830
Alignment:
| Q |
109 |
aagcttgctgtactaattgcannnnnnnncatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcac |
208 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39634530 |
aagcttgctgtactaattgcattttttttcatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcac |
39634629 |
T |
|
| Q |
209 |
ttgttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaaccatttctttgttttctgtggttttgcaggtttagaggaagtacttg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39634630 |
ttgttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaactatttctttgttttctgtggttttgcaggtttagaggaagtacttg |
39634729 |
T |
|
| Q |
309 |
gagagaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcacagattacttcacagtaaaattatctggtttgattt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39634730 |
gagagaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcacagattacttcacagtaaaattatctggtttgattt |
39634829 |
T |
|
| Q |
409 |
g |
409 |
Q |
| |
|
| |
|
|
| T |
39634830 |
g |
39634830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 39643344 - 39643716
Alignment:
| Q |
12 |
acagaactgagagatttcagcgcagacgcggctgcaaagctacttggtatgtgttgtgttgtgtttaatcatgg--gattttaaagcttagagctatata |
109 |
Q |
| |
|
|||||||||||| ||||| |||||| | |||||||||||||||||||||||| ||| | ||||||| | | | |||||||||||||||||| ||||| |
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| T |
39643344 |
acagaactgagaaatttctttgcagactcagctgcaaagctacttggtatgtgt-gtgctttgtttaaccttagtggattttaaagcttagagccatata |
39643442 |
T |
|
| Q |
110 |
agcttgctgtactaattgcannnnnnnncatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcact |
209 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
39643443 |
agcttgctgtactaactgcattttttttcatatgattctgttgttttcaactggttgaactctttacatcatttagtatctgattccccttttcatcagt |
39643542 |
T |
|
| Q |
210 |
tgttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaaccatttctttgttttctgtggttttgcaggtttagaggaagtacttgg |
309 |
Q |
| |
|
| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
39643543 |
g--taaacaaccatgtgcatcacttgttgaataatt-------taa--------------ttgttttctgtggttttgcaggtttagaggaaatacttgg |
39643619 |
T |
|
| Q |
310 |
agagaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcac-agattacttcacagtaaaattatctggtttga |
405 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |
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|
| T |
39643620 |
agagaatgaggtaatggttgagaaactaattaaaattatcatcttaattgatttgttcaatcactagattacttcacaataaaactatctggtttga |
39643716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 29123341 - 29123723
Alignment:
| Q |
12 |
acagaactgagagatttcagcgcagacgcggctgcaaagctacttggtatgtgttgtgttgtgtttaatcatgggattttaaagcttagagctatataag |
111 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||||| ||||||||||| | ||||||| || | ||||||||||||||||||||||||||| |
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|
| T |
29123341 |
acagaactgcgagatttcattgcagactcggctgcaaagccacttggtatgtat-gtgttgt---tagt----ggattttaaagcttagagctatataag |
29123432 |
T |
|
| Q |
112 |
cttgctgtactaattgcannnnnnnncatatgattctgttgttttcaactagttgaactctttacatcatttagtatctgactccccttttcatcacttg |
211 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
29123433 |
cttggtgtactaattgcatttttt--catatgattctgttgttttcaactggttgaactctttacatcatttagtatctgattccccttttcatcggtg- |
29123529 |
T |
|
| Q |
212 |
ttgaataaccatgtgcatcacttgttgaataattggtggagtaaaatgaaccatttctttgttttctgtggttttgcaggtttagaggaagtacttggag |
311 |
Q |
| |
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| || ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||| || |
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| T |
29123530 |
-taaacaacaatgtgtatcacttgttgaataattggtggagtaaaatgaatcatttctttgttttctgtggttttgcaggtacagaggatatatttgtag |
29123628 |
T |
|
| Q |
312 |
agaatgaggtaacggttaaaaaactaattaaaattatcatcttaattgatttgttcaatcac-agattacttcacagtaaaattatctggtttga |
405 |
Q |
| |
|
||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
29123629 |
cgaacgaggtaacagttacaaaactaattaaaattatcattttaattgatttgttcaatcactagattacttcacagtaaaactatctggtttga |
29123723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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