View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_16 (Length: 399)
Name: NF11660_low_16
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_16 |
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| [»] scaffold0604 (1 HSPs) |
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| [»] scaffold1067 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 138 - 390
Target Start/End: Original strand, 11237019 - 11237271
Alignment:
| Q |
138 |
ttccttatcgttgcagtagtgcatcgtttttctgctatattctgtaggtgggatgggatgagttacacaatagttgatttgttaaaattgctcttggaac |
237 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11237019 |
ttccttatcgttgcagtaatgcatcgtttttgtgctatattatgtaggtgggatgggatgagttacacaatagttgatttgttaaaattgctcttggaac |
11237118 |
T |
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| Q |
238 |
aattggataattatgttaactgaattggaatgcaaattgaatatattggaatgtaatagcaggaaagtgccaatgtcaatggaatatttgtggctggtag |
337 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
11237119 |
aattggataattatgttaattgaattggaatgcaaactgaatatattggaatgtaatagcaggaaagtgccaatgtcgatggaatatttgtggctggaag |
11237218 |
T |
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| Q |
338 |
ctcctatttgtgtaggcctaattgtcattgtattgtactcctcttgacctttg |
390 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
11237219 |
ctcctatttgtgtaggcctaattgttattgtattgtactccttttgacctttg |
11237271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 11240084 - 11239949
Alignment:
| Q |
1 |
aaaatatattaatacttgcacatattagcgaaaagcgtacggtaattacggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240084 |
aaaatatattaatacttgcacatattagcgaaaagcgtacgg------cggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacagg |
11239991 |
T |
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| Q |
101 |
acttgggcagcagctcttgttcgaagagtgttctatgttcct |
142 |
Q |
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| T |
11239990 |
acttgggcagtagctcttgttcgaagagtgttctatgttcct |
11239949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7672233 - 7672092
Alignment:
| Q |
1 |
aaaatatattaatacttgcacatattagcgaaaagcgtacggtaattacggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
7672233 |
aaaatatattaatacttgcacatattagcgaaaacggcacgataattacggtcgtaggtttgggagttactaagttattttgcatgttatattgtacaga |
7672134 |
T |
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| Q |
101 |
acttgggcagcagctcttgttcgaagagtgttctatgttcct |
142 |
Q |
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| T |
7672133 |
acatgggcagtagctcttgttcggagagtgttgtatgttcct |
7672092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 24026633 - 24026760
Alignment:
| Q |
16 |
ttgcacatattagcgaaaagcgtacggtaattacggtcgtaggtttgg-cagttactaagttattttgcatgttatgttgcacaggacttgggcagcagc |
114 |
Q |
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||||| ||| ||| |||||||||| |||||||||| |||| |||| || |||||||||||||| |||||||| || ||||||||||| || || |
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| T |
24026633 |
ttgcatataatagggaaaagcgtatggtaattacgatcgtttgttttttcaattactaagttatttaccatgttatattctacaggacttggatagtggc |
24026732 |
T |
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| Q |
115 |
tcttgttcgaagagtgttctatgttcct |
142 |
Q |
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||||||||| |||||||| | ||||||| |
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| T |
24026733 |
tcttgttcggagagtgttgtgtgttcct |
24026760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 43881142 - 43881056
Alignment:
| Q |
56 |
aggtttggcagttactaagttattttgcatgttatgttgcacaggacttgggcagcagctcttgttcgaagagtgttctatgttcct |
142 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
43881142 |
aggtttgccaattactaagttattttgcatgttatgttgcacaagacttgggcagtagctcttgttcggagagtgttctatgttcct |
43881056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 8395 - 8521
Alignment:
| Q |
16 |
ttgcacatattagcgaaaagcgtacggtaattacggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacaggacttgggcagcagct |
115 |
Q |
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||||| ||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||||||||||| | ||| |
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| T |
8395 |
ttgcatatattagcgaaaagcatacaataattacggtcgtaggttttgcaattactaagttatttagcatgttatattctacaggacttggataatggct |
8494 |
T |
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| Q |
116 |
cttgttcgaagagtgttctatgttcct |
142 |
Q |
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|||||||| |||||||| | ||||||| |
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| T |
8495 |
cttgttcggagagtgttatgtgttcct |
8521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 237 - 357
Alignment:
| Q |
22 |
atattagcgaaaagcgtacggtaattacggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacaggacttgggcagcagctcttgtt |
121 |
Q |
| |
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|||||| |||||| |||| ||| ||| |||| |||||||||| ||||||||||||||||||| |||| ||| |||||||||||||| | || ||||| |
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| T |
237 |
atattatcgaaaaccgtagggtgattctggtccgaggtttggcaattactaagttattttgcattttatattgtacaggacttgggcaataactattgtt |
336 |
T |
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| Q |
122 |
cgaagagtgttctatgttcct |
142 |
Q |
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|| || ||||||||||||||| |
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| T |
337 |
cggagggtgttctatgttcct |
357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 13737770 - 13737890
Alignment:
| Q |
22 |
atattagcgaaaagcgtacggtaattacggtcgtaggtttggcagttactaagttattttgcatgttatgttgcacaggacttgggcagcagctcttgtt |
121 |
Q |
| |
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|||||| |||||| |||| ||| ||| |||| |||||||||| ||||||||||||||||||| |||| ||| |||||||||||||| | || ||||| |
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| T |
13737770 |
atattatcgaaaaccgtagggtgattctggtccgaggtttggcaattactaagttattttgcattttatattgtacaggacttgggcaataactattgtt |
13737869 |
T |
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| Q |
122 |
cgaagagtgttctatgttcct |
142 |
Q |
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|| || ||||||||||||||| |
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| T |
13737870 |
cggagggtgttctatgttcct |
13737890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 30151626 - 30151675
Alignment:
| Q |
197 |
gagttacacaatagttgatttgttaaaattgctcttggaacaattggataat |
248 |
Q |
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| T |
30151626 |
gagttacacaa--gttaatttgttaaaattgctcttggaacaattggataat |
30151675 |
T |
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