View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_17 (Length: 392)
Name: NF11660_low_17
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 33946473 - 33946095
Alignment:
| Q |
1 |
cctttttgaagtagactatatttgattggaatacggttatgaagtaatctccgtgcaaacaataaaaatcttcaaaggaactaaagcattctagatgact |
100 |
Q |
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| T |
33946473 |
cctttttgaagtagactatatttgattggaatacggttatgaagtaatctccgtgcaaacaataaaa-tcttcaaaggaactaaagcattctagatgact |
33946375 |
T |
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| Q |
101 |
ttatacatgttatatctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcggaattaagatctcaaacacaggcatctt-cca |
199 |
Q |
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| T |
33946374 |
ttatacatgttatatctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcagaattaagatctcaaacacaggcatctttcca |
33946275 |
T |
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| Q |
200 |
cattatccttcaatgaaatattagacaacaaaaccttacggtcatccagcaacgcaacctcctacacaaacaaatgttttatccacctccaacaaccttc |
299 |
Q |
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| T |
33946274 |
cattatccttcaatgaaatattagacaacaaaaccttacagtcatccaccaacgcaacctcctacacaaacaaatgttttatccacctccaacaacctcc |
33946175 |
T |
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| Q |
300 |
cttaacatcaatgtctaacatcatatccctcaatgaaacgtttttctttgcaaaattaaacgatctacgaaagcactcct |
379 |
Q |
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| T |
33946174 |
cttaacatcaatgtctaacatcatatccctcaatgaaacgtttttctttgcaaaattaaacaatctacgaaagcactcct |
33946095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 39123206 - 39123391
Alignment:
| Q |
114 |
atctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcggaattaagatctcaaacacaggcatcttccacattatccttcaat |
213 |
Q |
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| T |
39123206 |
atcttcaaaattaaatatcaagttataaacttctataacataatacataccatcgagattaagatctcaaac-caagtatattccacattattctacaaa |
39123304 |
T |
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| Q |
214 |
gaaatattagacaacaaaaccttacggtcatccagcaacgcaacctcctacacaaacaaatgttttatccacctccaacaaccttcct |
301 |
Q |
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| T |
39123305 |
gaaatgctagataataaaa-cttacattcatccaccaactcaaccttccaaacaaacaagtttcttctccagctccaacagccttcct |
39123391 |
T |
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