View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_2 (Length: 675)
Name: NF11660_low_2
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Original strand, 38663219 - 38663818
Alignment:
| Q |
18 |
cacataatctccataatctcctacacccggtgggttcaagaactcccaatccgaagcacggctgcgattcttggaaggcaaggggtctctggcgacagag |
117 |
Q |
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| T |
38663219 |
cacataatctccataatctcctacacccggtgggttcaagaactcccaatccgaagcacggctgcgattcttggaaggcaaggggtctctggcgacagag |
38663318 |
T |
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| Q |
118 |
acaattggtagaattgtcacaggtccaaaaaattcttgaatgggggattattcaacaaagagtgttcactcatcaaaatcgtagtgagatagagtgagag |
217 |
Q |
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| T |
38663319 |
acagttggtagaattgtcacaggtccaaaaaattcttgaatgggggattattcaacaaagagtgttcactcatcaaaatcgtagtgagatagagtgagag |
38663418 |
T |
|
| Q |
218 |
ttgggtggctagagtggtggtagagtcgggagtttgtggttggtcgcgagagactggggacggttcggttatgtcacagttcttgttacccacactgctt |
317 |
Q |
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| T |
38663419 |
ttgggtggctagagtggtggtagagtcgggagtttgtggttggtcgcgagagactggggacggttcggttatgtcacagttcttgttacccacactgctt |
38663518 |
T |
|
| Q |
318 |
gaatatataataaaatatggtgggcccaattttaaattatggcttaattacataaataatttgttgttttttatttggtcccctaactcnnnnnnnnnnt |
417 |
Q |
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| T |
38663519 |
gaatatataataaaatatggtgggcccaattttaaattatggcttaattacataaataatttgttg-tttttatttgttcccctaactc-taattttttt |
38663616 |
T |
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| Q |
418 |
ttccattcggtcccttaaatatgttttgtcagtcaaattgatacaatccgttaatttttccaaagtctaatatttcagatgtgatttcagtcattatatt |
517 |
Q |
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| T |
38663617 |
ttccattcggtcccttaaatatgttttgtcagtcaaattgatagagtccgttaatttttctaatgtctagtatttcagatgtgatttcagttattatatt |
38663716 |
T |
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| Q |
518 |
gtaagttcattgcatgtaacactgatctaccaacacctaatttgtttcactttttatcatcttccctcttctttcttcctcatcatcaacaacaacacct |
617 |
Q |
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||| ||| ||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38663717 |
gtacgtttattgcatgtaacagttatccaccaacacctaatttgtttcacttttcatcatcttccctcttctttcttcctcatcatcaacaacagcacct |
38663816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 45395935 - 45395887
Alignment:
| Q |
551 |
cacctaatttgtttcactttttatcatcttccctcttctttcttcctcat |
600 |
Q |
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| T |
45395935 |
cacctaatttttttcacttttcatcatcttccctcttc-ttcttcctcat |
45395887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 29861572 - 29861663
Alignment:
| Q |
426 |
ggtcccttaaatatgttttgtcagtcaaattgatacaatccgttaatttttccaaagtctaatatttcagatgtgatttcagtcattatattg |
518 |
Q |
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||||||||||||||||| ||||||||||||||| || ||||||| ||||| | ||||||||||| ||||| |||||||| ||||| |||| |
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| T |
29861572 |
ggtcccttaaatatgttccgtcagtcaaattgatccattccgttagttttt-ttatgtctaatattttagatgcgatttcagccattagattg |
29861663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 560
Target Start/End: Original strand, 35563104 - 35563182
Alignment:
| Q |
482 |
gtctaatatttcagatgtgatttcagtcattatattgtaagttcattgcatgtaacactgatctaccaacacctaattt |
560 |
Q |
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||||||||||| |||||||||||||| ||||| |||| | || ||| | ||||||| ||||||||||| | ||||||| |
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| T |
35563104 |
gtctaatattttagatgtgatttcagccattagattgcaggtccatcgtatgtaacggtgatctaccaatatctaattt |
35563182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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