View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_23 (Length: 343)
Name: NF11660_low_23
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 44 - 325
Target Start/End: Complemental strand, 19443960 - 19443679
Alignment:
| Q |
44 |
ctaaaatatagtgattttaggagatttagtgaaggaaattgaggtattatggaggtgatcaattttctaattacaaattaccaaagtagatattttacta |
143 |
Q |
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| T |
19443960 |
ctaaaatagagttattttaggagatttagtgaagacaatagaggtattatggaggtaatctgttttgttattacaaattacggaagtagatatttaacta |
19443861 |
T |
|
| Q |
144 |
caattgattgggctaaagccgacttagttttcatggaggtatcccacgacctccagttttgctattaatgccacctctacaatctcctaaatctctcaaa |
243 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
19443860 |
caattgattgggctaaagctgacttagttttcatggaggtatcccacgacctccaattttgctattaatgtcacctctacaatatactaaatctctcaaa |
19443761 |
T |
|
| Q |
244 |
tattttcaaccttctttaccttcattttcttcacctccaccttgtgtaactctttcaccaccatttcctcctgatccaaaac |
325 |
Q |
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| T |
19443760 |
tatttttaaccttttttaccttcattttcttcacctccaccatgtgtaactctttcaccaccatttcctcctgatcccaaac |
19443679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 150 - 313
Target Start/End: Complemental strand, 19426138 - 19425975
Alignment:
| Q |
150 |
attgggctaaagccgacttagttttcatggaggtatcccacgacctccagttttgctattaatgccacctctacaatctcctaaatctctcaaatatttt |
249 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
19426138 |
attgggctaaagccgacttagtattcatggaggtctcccacaacctctagttttgttattactgccacctctacaatctcctaaatctctcaaatattat |
19426039 |
T |
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| Q |
250 |
caaccttctttaccttcattttcttcacctccaccttgtgtaactctttcaccaccatttcctc |
313 |
Q |
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| T |
19426038 |
caactttctttaccttcattttcttcacctccaccttgtgtaactccttcaccaccatttcctc |
19425975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 19426268 - 19426156
Alignment:
| Q |
47 |
aaatatagtgattttaggagatttagtgaaggaaattgaggtattatggaggtgatcaattttctaattacaaattaccaaagtagatattttactacaa |
146 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| |
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| T |
19426268 |
aaatatagtgattttaggagttttagtgaaggcaattgaggtattatggaggtaataaattttct-------tattacggaagtagatattttactacaa |
19426176 |
T |
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| Q |
147 |
ttgattgggctaaagccgac |
166 |
Q |
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||||||||||||||| |||| |
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| T |
19426175 |
ttgattgggctaaagacgac |
19426156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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