View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_28 (Length: 328)
Name: NF11660_low_28
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 48452458 - 48452612
Alignment:
| Q |
18 |
atattggctcttttaaatttcttatctaggaatacaagttttgctttgattgttatacgattggaattcaagatgcatctatttggacattggagaaata |
117 |
Q |
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| T |
48452458 |
atattggctcttgtaaatttcttatctaggaatacaagttttgctttgattgttatacgattggaattcaagatgcatctatttggacattggagaaata |
48452557 |
T |
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| Q |
118 |
tttgtattaaaaaatttaatcacattttcaaatcatatcacaaatgctaccagac |
172 |
Q |
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| T |
48452558 |
tttgtattaaaaaatttaatcacattttcaattcatatcacaaatgctaccagac |
48452612 |
T |
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Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 48452669 - 48452767
Alignment:
| Q |
229 |
ggattgtacaaacacaaacaaaaattaagtataatacaaaaagtaaagaacgagataatgactaaaatcaaccaagaaactaaaacaccttgtctcctc |
327 |
Q |
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| T |
48452669 |
ggattgtacaaacacaaacaaaaattaagtataatacaaaaagtaaagaacgagataatgactaaaatcaaccaagaaactaaaacaccttgtctcctc |
48452767 |
T |
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